PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0099s0028.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 774aa    MW: 85403 Da    PI: 7.524
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0099s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.61.2e-31211295187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+l+Li++r+em++++r++ lk+plWe+v++k++e g++rs+k+Ckek+en++k+ykk+k+g+ +r  ++ +++++f++l+a
  Sphfalx0099s0028.1.p 211 RWPRQETLLLIQIRSEMDSNFRDSGLKGPLWEDVARKLAELGYHRSAKKCKEKFENIHKYYKKTKDGKAGR--QDGKNYRFFSELDA 295
                           8********************************************************************97..66678******985 PP
2trihelix98.55.7e-31562648187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+  ev+aLi++r eme+r++++ +k+plWee+s+ m++ g+  r++k+Ckekwen+nk+y+k+ke++kkr +e+s+tcpyf+qlea
  Sphfalx0099s0028.1.p 562 RWPTPEVHALIRLRMEMESRFQETGAKGPLWEEISRGMSSMGYsFRNAKRCKEKWENVNKYYRKTKESNKKR-AENSKTCPYFHQLEA 648
                           8******************************************558*************************8.78889********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.0E-4208270IPR001005SANT/Myb domain
CDDcd122032.16E-31210275No hitNo description
PROSITE profilePS500906.946210268IPR017877Myb-like domain
PfamPF138372.2E-23210296No hitNo description
SMARTSM007170.16559622IPR001005SANT/Myb domain
CDDcd122033.11E-30561627No hitNo description
PfamPF138371.0E-20561649No hitNo description
PROSITE profilePS500906.69562620IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MQSSGQYGVT EVPQFVVGGS QQHPSQAHIF SLAHDHMSLS PPTSGHGHHH PGQQQHLYSH  60
HQQQQVVAPK EPQQSLHHLH AHQQSQASSH SPHQQRQQHQ HMQQQQQHHH HHHQQQQQTS  120
VQHQHQMVHQ LGLGGGGPDS PEAAAASPSP PVASSRPSPP TNTGFAKQMM STAAGMSLQA  180
QQLGHEAAAA DDDGNMELGE EGRSTGGGGN RWPRQETLLL IQIRSEMDSN FRDSGLKGPL  240
WEDVARKLAE LGYHRSAKKC KEKFENIHKY YKKTKDGKAG RQDGKNYRFF SELDALYSGR  300
RNNVVGASTR DADHATAATT LLLPAGGGRG LDHIGAPSAF RAAAAAEEEN NNVAAVSDSS  360
EENHNEAEGG DEEDEDEDED DNTTRSKKRF KRSSKDSDHG DLHARTSSSS SKKKVMLLES  420
LVKKLMDKQE AMQRKFLDSM EKREHDRIAR EEAWKRQEME RMTREHELRI QQHTLAATRD  480
AALIAVLQKV TGQTLQLPQI PEPHPPHPSS PPSPPPLPVQ QQQQHTTTAI QPRNHRIQQQ  540
LQHPQDVEPG DGKDGFDLHS KRWPTPEVHA LIRLRMEMES RFQETGAKGP LWEEISRGMS  600
SMGYSFRNAK RCKEKWENVN KYYRKTKESN KKRAENSKTC PYFHQLEALY HNAGSLHCGS  660
KLPPRASSKV IHEGAQSQDV ALQLPPAAAG LQQDHRDDHD QSCSREALAQ DSVNTEVMQL  720
PASAPGAADG SGSASNGAAT AHLFSSPENG SSGDPGGSGI SITKKALQGR TSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9RNY91e-172A9RNY9_PHYPA; Predicted protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.26e-54Trihelix family protein