PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0096s0061.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 23180.1 Da PI: 10.4181 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.7 | 2.1e-11 | 56 | 101 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaia 48 s+ykG+r+++ +r+ +eIr ++++++lg++ ta eAa+a +a Sphfalx0096s0061.1.p 56 SRYKGIRYRPELNRYISEIRP----AlpRKRKIWLGTYKTAIEAARAFDA 101 79****************998....44556*****************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.77E-12 | 56 | 116 | No hit | No description |
Pfam | PF00847 | 2.7E-6 | 56 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-11 | 56 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-17 | 57 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-7 | 57 | 121 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.749 | 57 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSHKLDQVQS GTILYDNRVQ FTSSKLLDQL PHRSVPAAAA GQNHEVGSMN NHGQESRYKG 60 IRYRPELNRY ISEIRPALPR KRKIWLGTYK TAIEAARAFD AGIFYTGRKI PFNFPEFAKQ 120 LPPLDDNLTQ DERHTAIQKR AKLAAAMKHV VDSYDGIATT STPSSGLTSR STTTTTTQQK 180 QQQQYTSKIS NAHLPFYQFL PSPRD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 1e-13 | related to AP2 9 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0096s0061.1.p |