PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0096s0056.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 731aa    MW: 79091.9 Da    PI: 6.1024
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0096s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.56e-19609705295
                           EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                            k+l psdv+++gr+vlpkk ae+h   +  +e++ + +ed  sg+ W++++++  ++ks++y+l+  + +Fvka++L+egD ++ +  
  Sphfalx0096s0056.1.p 609 HKELRPSDVSNLGRIVLPKKEAEHHlpFLAAREGQSIAMEDfDSGKIWTFRYRFwpNNKSRMYLLE-ITGDFVKAHHLQEGDLLIMY-- 694
                           58999*****************999**666677889*****9999*******99777777777777.9*****************99.. PP

                           SS.SEE..EEE CS
                    B3  86 gr.sefelvvk 95 
                           ++ +++++vv+
  Sphfalx0096s0056.1.p 695 RNvQQGNYVVR 705
                           56688888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-28600706IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-21607696IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.419608710IPR003340B3 DNA binding domain
SMARTSM010197.8E-16608710IPR003340B3 DNA binding domain
PfamPF023622.0E-15610705IPR003340B3 DNA binding domain
CDDcd100171.55E-24610705No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MLQSVVGGSL EIADHWRSCA GSTSWNEVVV PGALKCVRDG MEAMVPPRHM CMISHGSTST  60
STSTTAAAAS LKISGMHQLP AAWSSNVVLQ QASSRPEHVM EYEGPPMRVY MEEEEPVVDP  120
FQQAKDWLDD AADDLADAVE WPNLPCEASP LNLILENSSC SNGGGGGGGE IQEEEENGRG  180
LQQQNCCASQ AQKEENVLSE PAEVCLLQPD SIPACTPCRF SSSSSSTGGP GVMATEEAAA  240
AAAASSEDSN QQAAAAAPPP YLLDGNLRAV LKKVTVNEAS LNKAIEGFGG GDKGMKVLLE  300
YIMSWVCREQ NHSNVSVVQH CLEQLNRQQQ QQQQQKQLEG LGVEPPPAIV ASQHLNPSFP  360
MPTAAATPQP DDYMIGLSKS HGGSIVTSYA LAAHEEDSED HHLRSWQQLA LLEQHWQQRL  420
QQYADFCNTG RKPQQLPAMM TTSFASIVDV PAYDPQGAVE NVSPVVGPYP SSSSSSSSSS  480
AHGLQLPSVP SQLQQLGAAA AMSNNSLHSI IHSNFKSAWI PSSVSKQATA ITMRAARKSR  540
MAARQLRAHS TVPPRHYSRN AATNPGCNAS ISMALQPGDL KKLQMQQDLL TLGSEGQGRN  600
MDSLLFLLHK ELRPSDVSNL GRIVLPKKEA EHHLPFLAAR EGQSIAMEDF DSGKIWTFRY  660
RFWPNNKSRM YLLEITGDFV KAHHLQEGDL LIMYRNVQQG NYVVRGEKKV VVVGARKPNP  720
VKTKTNVQVD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-366067083105B3 domain-containing transcription factor FUS3
6j9b_D2e-366067083105B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-37B3 family protein