PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0095s0063.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 348aa    MW: 39803.9 Da    PI: 7.8279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0095s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-064569123
                          EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                          + C+   C k+++r ++L+rH+ tH
  Sphfalx0095s0063.1.p 45 FACTfiGCEKTYKRGDHLNRHMLTH 69
                          789999******************9 PP
2zf-C2H220.71.1e-067698323
                          ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                          Cp   Cg+ F+ +snL+rH+r H
  Sphfalx0095s0063.1.p 76 CPykGCGQAFTMNSNLQRHLRGH 98
                          9999*****************98 PP
3zf-C2H215.93.7e-05160183323
                           ET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                           Cp   Cgk F+ +s L++H+   H
  Sphfalx0095s0063.1.p 160 CPepGCGKAFRFPSCLQTHQEHvH 183
                           8999***************98766 PP
4zf-C2H212.70.00038249274123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           ++C+   C  s+++ksnL++H    H
  Sphfalx0095s0063.1.p 249 FPCSfpGCLHSYTTKSNLNQHVTAvH 274
                           789999***************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-123570IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.03E-63870No hitNo description
SMARTSM003550.00334569IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2814574IPR007087Zinc finger, C2H2
PROSITE patternPS0002804769IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-761103No hitNo description
Gene3DG3DSA:3.30.160.601.5E-97298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00447498IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5774103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807698IPR007087Zinc finger, C2H2
SMARTSM003558.8129154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-5156185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.045158183IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972158183IPR007087Zinc finger, C2H2
PROSITE patternPS000280160183IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621193219IPR007087Zinc finger, C2H2
SMARTSM003550.19193218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
SMARTSM0035512221242IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.51E-9232289No hitNo description
Gene3DG3DSA:3.30.160.601.1E-7233271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.014249274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72249279IPR007087Zinc finger, C2H2
PROSITE patternPS000280251274IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-4273300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.3280306IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349280311IPR007087Zinc finger, C2H2
PROSITE patternPS000280282306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MISSDLAMLV WQPKQQQQQQ EEEEDEEEDE EEKQQQQHRH EQRPFACTFI GCEKTYKRGD  60
HLNRHMLTHG GKRFLCPYKG CGQAFTMNSN LQRHLRGHEQ RFPTTTTTSS QVFGGGFPAA  120
AHFSENERVE CLEPGCGRLF LSPWGLRGHE FHAHGKRLAC PEPGCGKAFR FPSCLQTHQE  180
HVHGKMSAED MTTVCLEPGC GETFQGVTEL RLHKKASHSS VVCDICGMSM MRTSLKQHLV  240
THEDETRLFP CSFPGCLHSY TTKSNLNQHV TAVHKELKPY ICSHVDCGRQ FAYRAVRDRH  300
EMSGLHFPSQ GDFELEDAKF RGMQRGGRKR LFLHSVEDLL RQKKRHS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-54transcription factor IIIA