PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0091s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23802.8 Da PI: 7.952 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.6 | 8.2e-10 | 116 | 157 | 2 | 49 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaa 49 +++GVr kk g++vAeIr+ +kr++lg++ ae Aa a++ a Sphfalx0091s0017.1.p 116 KFTGVR--KKAGSFVAEIRVsT-----KKRIWLGSYKRAEPAALAHDVA 157 789**6..679*********33.....5*****************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-14 | 116 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-11 | 116 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.96E-13 | 116 | 175 | No hit | No description |
PROSITE profile | PS51032 | 11.614 | 116 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-8 | 118 | 175 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MGDGGRSRLY CPGSPGAKLR EKLRQLKDKR VGIEPDACVY ARLEPCGEFV SSSDSHRTGN 60 PEIVSEVLPT DVHRDDAEQQ GVKFDLDYAL RQPLCATDLD LEEFPGDHAA GNRQLKFTGV 120 RKKAGSFVAE IRVSTKKRIW LGSYKRAEPA ALAHDVATYL RATYLSGANP QYNFDSSPSS 180 FPPSKEISDL ETDEEKWELI KKIAGEFAKK VARR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G06746.1 | 9e-11 | related to AP2 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0091s0017.1.p |