PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0087s0080.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 934aa    MW: 103830 Da    PI: 6.6256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0087s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09874929248
                           SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                           ++WT+ E+e l ++vk++ ++     +Wk+Ia+         Rt  ++k++w+++l
  Sphfalx0087s0080.1.p 874 LPWTKMEEEVLMEGVKRFSNDglygfQWKRIAEFGYgkfdPSRTTVDLKDKWRNLL 929
                           69******************************86436999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.62E-12525578IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.7E-13525581IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.339528577IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-8530575IPR001965Zinc finger, PHD-type
PfamPF006284.8E-7531576IPR019787Zinc finger, PHD-finger
SuperFamilySSF466894.19E-9870930IPR009057Homeodomain-like
CDDcd116602.61E-12875930No hitNo description
PfamPF002492.1E-6875929IPR001005SANT/Myb domain
PROSITE profilePS500908.374875929IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-10875930IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MASPQASVGL AWKWVLEKMV ELPDFRPMFL KDIIAHVPDI EEAQCHSLLE RVAIRYLEEL  60
VMTNQLDARA IPLLNLLIGQ GSRDPSTGVA ATMENRFSRE LLLQVQTEAV LSILRRPSPM  120
AKKDWAAYAS ALDHVFPEGQ EEPHLIDRRK ELALLLMAKN QTNEILARYL AKHPLNKLKT  180
DLCAFVADRK LSFGSSFLNQ LSKDVLAGNA PSFSGISVKE HVAAVVGAHE MHEIVGTATN  240
SSDGAESFGR EENCNKEVQS LRMRRERNTC TENEDSNQQV AKALGRSGRR RKLLDLEDQN  300
EHEEDYNKEA QSLRMRHETN AGSTGQEESD QQQPGDREKQ QQKALGRSGR RMPLDSEDST  360
QPEEVTQLEK HQRVKKNKTI SVDASANHHN ASPVERPKEA ATQVRHEKFQ SFFADLCNRS  420
KEQRSSHLTG ISVGAEVKNS PTSQVPSHKY VVPKDVNSDD DTLIVRKVST SDDNQMDSLK  480
NAASHDKPEL HEAEDDGTHE RGGRLGDESE MRECDTMEHI EIGSDEHEDL CHKCEKYGAL  540
LCCDGCPIAM HADCLEILGL KIPGPEDDWF CPICADKMAA ELLTDAKQAA AEAKVAKEAF  600
IREISKKRNH SQGDDSLQPK GLVHKLADNY VVKSKSPHVA ISDDTGNRSP SRYRHEEVLH  660
SKELRMEPVD GTLFASTSKD AKVHRQKSRN WVRESSSGDD SENVAQRGGS NVGYVEKQVS  720
LEKSLVSERT NIDKHGHLSG DHNADAGHPS TSKFEAVKRK NKEQVIRGGS LHTCNSRKLQ  780
NSTGGSALAD GQQVRRSSLE ARKSVSGNES RPQVAPHVSG GDEGGTVSGA NKEVEDNHDV  840
DSEEEHGDGK TSGRNLKPFS SGRRQIPGLR RKVLPWTKME EEVLMEGVKR FSNDGLYGFQ  900
WKRIAEFGYG KFDPSRTTVD LKDKWRNLLK GVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266RMRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-06MYB_related family protein