PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0085s0024.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 519aa MW: 55347.9 Da PI: 7.0965 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.8 | 5.2e-10 | 85 | 110 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +G +C+F+H+p Sphfalx0085s0024.2.p 85 GEPDCVYYMRTGLCGFGQTCRFNHPP 110 5799********************97 PP | |||||||
2 | zf-CCCH | 36.2 | 1e-11 | 130 | 155 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ Sphfalx0085s0024.2.p 130 GQPECQYYLKTGTCKFGATCKYHHPR 155 789*********************96 PP | |||||||
3 | zf-CCCH | 38.9 | 1.4e-12 | 176 | 201 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG CkyG +CkF+H+p Sphfalx0085s0024.2.p 176 GEKECAYYMRTGSCKYGVTCKFHHPP 201 7899********************97 PP | |||||||
4 | zf-CCCH | 35.8 | 1.3e-11 | 339 | 365 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +C+++H++ Sphfalx0085s0024.2.p 339 PGQPECQYYMKTGDCKFGITCRYHHPK 365 5789*********************96 PP | |||||||
5 | zf-CCCH | 29.6 | 1.2e-09 | 387 | 410 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+f+ +G+Ck+G++CkF H+ Sphfalx0085s0024.2.p 387 APPCSFYNHYGICKFGPTCKFDHP 410 689********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.859 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-7 | 86 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 88 | 111 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.732 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 129 | 155 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 134 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 174 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 174 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 176 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 177 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-5 | 180 | 199 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.774 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 342 | 366 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.831 | 384 | 412 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-6 | 384 | 411 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-7 | 387 | 410 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MEYYAPAKGA PSSFAGLESS GSESTGLAVL GSIQYDDWRG KHGAPSPGST TADTGPDEAV 60 WQMTMQPHQE GIDAAGQGQF PERLGEPDCV YYMRTGLCGF GQTCRFNHPP NRKMAAAVAR 120 GKGDYPERFG QPECQYYLKT GTCKFGATCK YHHPRDQAGS TGRVQLNGLG LPLRPGEKEC 180 AYYMRTGSCK YGVTCKFHHP PVATFVSPHY TTTGAPTSPA PQPYPPGLPS WPMARAPYLQ 240 PRLQGPSTYS PVLLPSHQGL VSVPAWNTYQ GPVGPMTLPE GQQHPLGTSY LYGTLQQSDS 300 GSVQGTYAPY LQGSSAMGVP AIQPHNTNSQ RDTIFPERPG QPECQYYMKT GDCKFGITCR 360 YHHPKDRAIP SPTCILSPMG LPLRPGAPPC SFYNHYGICK FGPTCKFDHP LLGLTYSPSA 420 SSLTDMPVAP YPTGLSPTAL GPSPVEAPHE GPSGASSSNE PTAPSEEHPG LQQLRDGSDL 480 SVVSASAGAT TTQDLSTQAT ISGMGSRKDN QVESHEIP* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373414.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373415.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373416.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 1e-144 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2R6XC55 | 0.0 | A0A2R6XC55_MARPO; Uncharacterized protein | ||||
STRING | PP1S102_155V6.1 | 1e-164 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-122 | zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0085s0024.2.p |