PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0085s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 522aa MW: 55589.2 Da PI: 7.0965 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.7 | 5.2e-10 | 88 | 113 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +G +C+F+H+p Sphfalx0085s0024.1.p 88 GEPDCVYYMRTGLCGFGQTCRFNHPP 113 5799********************97 PP | |||||||
2 | zf-CCCH | 36.2 | 1e-11 | 133 | 158 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ Sphfalx0085s0024.1.p 133 GQPECQYYLKTGTCKFGATCKYHHPR 158 789*********************96 PP | |||||||
3 | zf-CCCH | 38.9 | 1.4e-12 | 179 | 204 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG CkyG +CkF+H+p Sphfalx0085s0024.1.p 179 GEKECAYYMRTGSCKYGVTCKFHHPP 204 7899********************97 PP | |||||||
4 | zf-CCCH | 35.8 | 1.3e-11 | 342 | 368 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +C+++H++ Sphfalx0085s0024.1.p 342 PGQPECQYYMKTGDCKFGITCRYHHPK 368 5789*********************96 PP | |||||||
5 | zf-CCCH | 29.6 | 1.2e-09 | 390 | 413 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+f+ +G+Ck+G++CkF H+ Sphfalx0085s0024.1.p 390 APPCSFYNHYGICKFGPTCKFDHP 413 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.0E-5 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-7 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.732 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 137 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 177 | 205 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 177 | 204 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 179 | 204 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-6 | 180 | 203 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-5 | 183 | 202 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.774 | 341 | 369 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 341 | 368 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 343 | 368 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 345 | 369 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-6 | 387 | 414 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.831 | 387 | 415 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-7 | 390 | 413 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MEYYAPAKGA PSSFAGLESS GSESTGLAVL GSIQYDDWRG KHGAPSPGST TADTGPDGLA 60 EAVWQMTMQP HQEGIDAAGQ GQFPERLGEP DCVYYMRTGL CGFGQTCRFN HPPNRKMAAA 120 VARGKGDYPE RFGQPECQYY LKTGTCKFGA TCKYHHPRDQ AGSTGRVQLN GLGLPLRPGE 180 KECAYYMRTG SCKYGVTCKF HHPPVATFVS PHYTTTGAPT SPAPQPYPPG LPSWPMARAP 240 YLQPRLQGPS TYSPVLLPSH QGLVSVPAWN TYQGPVGPMT LPEGQQHPLG TSYLYGTLQQ 300 SDSGSVQGTY APYLQGSSAM GVPAIQPHNT NSQRDTIFPE RPGQPECQYY MKTGDCKFGI 360 TCRYHHPKDR AIPSPTCILS PMGLPLRPGA PPCSFYNHYG ICKFGPTCKF DHPLLGLTYS 420 PSASSLTDMP VAPYPTGLSP TALGPSPVEA PHEGPSGASS SNEPTAPSEE HPGLQQLRDG 480 SDLSVVSASA GATTTQDLST QATISGMGSR KDNQVESHEI P* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373414.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373415.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373416.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 1e-142 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2R6XC55 | 0.0 | A0A2R6XC55_MARPO; Uncharacterized protein | ||||
STRING | PP1S102_155V6.1 | 1e-164 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-122 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0085s0024.1.p |