PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0084s0065.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 464aa    MW: 50936.7 Da    PI: 6.9787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0084s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09265311455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h  rEr RRd++  +++ L +llP        K + a+i+e A++++k+Lq
  Sphfalx0084s0065.1.p 265 EHILRERHRRDDMTVKYSILESLLPAG-----SKRDRATIVEDAIKFVKDLQ 311
                           6999*********************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.2E-10259326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.627261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-12264330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-7265311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-7266312No hitNo description
SMARTSM003534.1E-8267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDMSRGVSVL ALDEQLDAAV GFGFHHHGSS PGLWCDSRRP AAALVSSFGV AEQDQDDIAD  60
SLAHNPFTWL QPCGLPLSDV EIEPSISKIL EDLPDISKET LFPTDNTTSP QSKATAMPPG  120
SSPLSASDVL QIPPQTHFPT SESFVGKSEN LTHDQMLSYD PIPTHVAPAA HHGGLGAHSK  180
TLLPTSDDCK SRSSGYVGKE DAIVPTTGRC DDRHPEDSSA RAHKRTKTTA ATVDHLQQRP  240
KKMAEPELEG FVKRTRWSRP TDQAEHILRE RHRRDDMTVK YSILESLLPA GSKRDRATIV  300
EDAIKFVKDL QHRRDKLLKR CSRMKPAAAP DPPPRRDIHM QTVMLQFTMP AIKHSRVGDS  360
SSPSSLSMQE SPGSESIITR DCYAHSDLLN EIMIEMMCKP RPNFQSTLLQ AVESQNLELI  420
RCTVTKTPIG MICIIVAKQQ NYPGSPHSHA SIIQALKAAV QVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.12e-08bHLH family protein