PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0084s0048.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRAS | ||||||||
Protein Properties | Length: 516aa MW: 56575.3 Da PI: 6.0881 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 440 | 1.7e-134 | 147 | 513 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 lv+ Ll+cAeav++gdl +a++++++++ lasp g pm ++aa+f eAL r+++ +++l++ ++ e++ ++ +e l++ ++e++P Sphfalx0084s0048.1.p 147 LVHSLLACAEAVQHGDLVRAEETVCHIQLLASPPG-PMGKVAAHFIEALTLRIYS-GTSLVRNVTNYESD-NSLTELLHF--HYYETCP 230 689******************************98.9*****************9.77777766666664.456666666..49***** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 +lkf+hltaNqaIlea+ege++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+ + + +e+g +La++Ae+++++fe Sphfalx0084s0048.1.p 231 YLKFAHLTANQAILEAFEGEKQVHVIDFNLMHGLQWPALIQALALRPGGPPaLLRLTGIGP----PHASGNEIGMKLAQLAESVNIEFE 315 ***********************************************8888789*******....89********************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 f+ +va +l+++++++L+v+pgEa+aVn+vlqlhrll ++++ ++d+vL+ v +l+Pk+v++ve+ea+hn++ Fl rf+eal+yys Sphfalx0084s0048.1.p 316 FRGVVALKLDEVKPWMLQVSPGEAVAVNSVLQLHRLLYSDGPHVPaAIDDVLQSVLGLKPKIVTIVEHEANHNAPGFLSRFTEALHYYS 404 ****999******************************9998876669****************************************** PP GRAS 266 alfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 ++fdsl + +lp++s+++ vE lgrei+n+vaceg +r+erhe+le+Wr+r+ +aGF+p++l+ +a kqak+ll +++dgyrvee Sphfalx0084s0048.1.p 405 TMFDSLeACNLPPQSSQQLLVEMY-LGREICNIVACEGVARVERHENLEQWRRRMVKAGFQPLQLGFNALKQAKSLLTLFSGDGYRVEE 492 ******8889**********9977.**************************************************************** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 ++g+l+lgW++rpL++ SaW+ Sphfalx0084s0048.1.p 493 NNGCLTLGWHTRPLIASSAWQ 513 ********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.644 | 121 | 493 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-132 | 147 | 513 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MACSSSDLSG WIEGMIEELT ASNGQHSSRS PLVTTDSPHC THNALDSLLD TTGFPSQQAA 60 APSSSQHYQE TLVDRFTGQQ LPCMTSLPES SNSWMLHHVP STTSYSSKTM LPPPPSAPME 120 RINGRVQQKV VNSNAALKEQ EDSGVQLVHS LLACAEAVQH GDLVRAEETV CHIQLLASPP 180 GPMGKVAAHF IEALTLRIYS GTSLVRNVTN YESDNSLTEL LHFHYYETCP YLKFAHLTAN 240 QAILEAFEGE KQVHVIDFNL MHGLQWPALI QALALRPGGP PALLRLTGIG PPHASGNEIG 300 MKLAQLAESV NIEFEFRGVV ALKLDEVKPW MLQVSPGEAV AVNSVLQLHR LLYSDGPHVP 360 AAIDDVLQSV LGLKPKIVTI VEHEANHNAP GFLSRFTEAL HYYSTMFDSL EACNLPPQSS 420 QQLLVEMYLG REICNIVACE GVARVERHEN LEQWRRRMVK AGFQPLQLGF NALKQAKSLL 480 TLFSGDGYRV EENNGCLTLG WHTRPLIASS AWQYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-65 | 138 | 512 | 10 | 378 | Protein SCARECROW |
5b3h_A | 5e-65 | 138 | 512 | 9 | 377 | Protein SCARECROW |
5b3h_D | 5e-65 | 138 | 512 | 9 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361039.1 | 0.0 | DELLA protein GAI-like | ||||
Swissprot | Q8S4W7 | 1e-152 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A7U4T4 | 0.0 | A7U4T4_SPHPA; DELLA protein | ||||
STRING | PP1S12_244V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-131 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0084s0048.1.p |