PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0077s0031.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 669aa    MW: 72389.4 Da    PI: 6.1258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0077s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.82e-32368425158
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                           ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+k+versaedp +v++tYeg+H h
  Sphfalx0077s0031.1.p 368 MEDGYKWRKYGQKAVKNSPNPRSYYRCTAPKCPVRKRVERSAEDPGLVITTYEGTHIH 425
                           58******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-34353428IPR003657WRKY domain
SuperFamilySSF1182906.54E-28360426IPR003657WRKY domain
PROSITE profilePS5081130.917363428IPR003657WRKY domain
SMARTSM007741.7E-37368427IPR003657WRKY domain
PfamPF031063.7E-25369425IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEGGGHESNE LERLIRSWGN EHVPAGSQRE QEAQLFVTPP LREVVHGAFE SMMMLQQQQG  60
QQQQLVPPSF PDEFLNPLAV PSPTAEWLNF MSMTNNDPLQ GPAYSSAAAA AAAASAFATT  120
SSTGGFLTFQ QLQRELLSSD SAAAHDFANS AWDFVENQTT PKIGNFPAGN NSEPLNLDAI  180
QELLNTTMSS GSNPHLTGSR TPQFLMPATH QSSGHHHHQQ QLAGDSDLYN QWRRASPPQT  240
QFHSPSPPSA VGSVSPVHTS PSLSTHGGRR SPSPARLPNS AGSTLPNTPN SSVSSGSFSD  300
GPEPPATAAG PSASTSKRKT PDRATDEENE EIQSPELKKP SNKARKKGPK RVREPRYAIQ  360
TRSEIEIMED GYKWRKYGQK AVKNSPNPRS YYRCTAPKCP VRKRVERSAE DPGLVITTYE  420
GTHIHLSPAM NGSASRASNS DAPSLLVASG ENRPGGAAYQ PPASSFPFPS SVNPIPPARS  480
TYDLTVQIQS GLQRDHEAAT SSILSSYTQD IQTAGASTAY NLQSLNIQES DFLTIRSHGS  540
WHGSLQEFNP SMPDENLSNM LRTQQQQMHG TRNQMQEAQQ NTEGQMFRAV NFGAHRIGGE  600
ESSDDILTGL HIPFWASGSE PRSTTRGMEE QLASASAAAT SDESQLRDDQ SPINDELLGD  660
VVRLGVHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24358429778Probable WRKY transcription factor 4
2lex_A1e-24358429778Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-36WRKY DNA-binding protein 57