PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0071s0028.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 347aa    MW: 37730.3 Da    PI: 5.0112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0071s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.85.3e-2445102359
                           -SS.-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 Dgy.nWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg+ +W+KYG+K++++++f r+YY+C+ ++C++kk v+r++ dp+++e+tY+g+H+++
  Sphfalx0071s0028.1.p  45 DGHrRWKKYGKKSIRNANFCRAYYKCSVKECNAKKTVQRTDADPSLFEVTYSGTHTCT 102
                           77636***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-2438103IPR003657WRKY domain
SuperFamilySSF1182906.41E-2142102IPR003657WRKY domain
SMARTSM007743.8E-2543103IPR003657WRKY domain
PfamPF031068.7E-2145101IPR003657WRKY domain
PROSITE profilePS5081117.2014999IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTCLIFISRE VPDAADGDEA VREDVMIAYQ RLRPGVDTKK AIPQDGHRRW KKYGKKSIRN  60
ANFCRAYYKC SVKECNAKKT VQRTDADPSL FEVTYSGTHT CTTMSKKQKR FQLPHVPPPA  120
AAAAACLAEV SDDLLALDHP DQLSKITAMA DHAAAAPAAC HDMKLEREMA SIANASRMKD  180
GDQQEVEFAG PLKPQNGVSV LYLPSTATEE AAAVEDKELA ADVTAKRFSS LPELVAGPSG  240
RHDITEPTNS SGADLESLEA ISSDSSMPGS CCHDVQSTSV DMIDTYILNT VTSNIAGGLT  300
LHDLEGCPDL IHHDHWQLVH NAGNQANDFQ DSLFDWPDLL MDNKLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-17WRKY family protein