PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0069s0061.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 726aa    MW: 75843.4 Da    PI: 7.4104
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0069s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-08257277526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C++f++ G C++Gd C +aHg
  Sphfalx0069s0061.1.p 257 ACPDFRK-GSCRRGDACEYAHG 277
                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.3E-6252278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751253279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4257279IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-6257277IPR000571Zinc finger, CCCH-type
SMARTSM0035611287310IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085287311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MPGVLIDEHH PFGLENLGNN GCGGSIYDFV GYPCSPLTQH NHHHHQSAAA AQHTMRRLNT  60
FSAGMKDSET LAASSLGLPQ QQSAPSPHHH MYQRSHSFGN TANLHAFNNY FIGGGSPPNS  120
PAKSDLGLSL LDGMDDGFFE GNEGGKTGGG SGRSDLRSLS FGGSAMSGSG SSSSLVGSPT  180
FPDSLHSFNK FLPSNNEDEE AWPAVDMYGC DQFRMFEFKV RRCMRGRSHD WTECPFAHPG  240
EKARRRDPRR FHYSGTACPD FRKGSCRRGD ACEYAHGVFE CWLHPARYRT QPCKDGRNCR  300
RRVCFFAHTP EQLRLLPAAA QAATAAARSS SGGLSGSQAA ASAAALNACL SQAYDGSPGR  360
GGGAYDGAFV YEGGASSSSF DGGSSSPSAH AGSPLSHYNG ISSAAAAAAA ALAGQSCVPS  420
QMSSPTSTLV GHAHSPPPLS PPLSPSGSPP HSPSSPHGCW PSCSSLSSSP NFSSLSAASQ  480
AAMTQVLTQA SLQASLSQAS LARSQSSQAM GVGVGNGGGA TGASSGAHPR SPPTPAHRRH  540
LDRLSSMPTL SIPCGDHRSL QQQQQAAGLP GSAPVSPAGG GSLGHHQSNK SMLELIATLQ  600
QLELRGGGGS STPPSSSSTA QWLQQQYSSG PSPLRRCSLS VPGTPTKLQW EQAPAAPAKG  660
RWEVDENEEG EPTVQRVESG RDLRATIYGR LGNRPLEVVA NGDDPDLGWV NELVKEEPEQ  720
TPTCW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149GGKTGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376584.10.0zinc finger CCCH domain-containing protein 30-like
TrEMBLA0A2K1KJM20.0A0A2K1KJM2_PHYPA; Uncharacterized protein
STRINGPP1S297_45V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.19e-71C3H family protein