PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0068s0052.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 608aa    MW: 66619.1 Da    PI: 5.1871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0068s0052.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-17317367255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIr     + ++ +r +lg+f+taeeAa+ ++aa+ k++g
  Sphfalx0068s0052.2.p 317 HYRGVRQRP-WGKFAAEIRN----KaRQgARMWLGTFDTAEEAAEEYDAAAFKIRG 367
                           6********.********99....44335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-20317376IPR016177DNA-binding domain
PROSITE profilePS5103223.235317375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-28317376IPR001471AP2/ERF domain
CDDcd000181.83E-19317375No hitNo description
SMARTSM003805.7E-34317381IPR001471AP2/ERF domain
PfamPF008475.5E-13317367IPR001471AP2/ERF domain
PRINTSPR003671.4E-9318329IPR001471AP2/ERF domain
PRINTSPR003671.4E-9341357IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MWVLSSSSYK VQEKFGNHRV LKQQQKQFRN QLSRIPDPVS GIAAFYEFAA VGSSSSSSRT  60
GEFPAATTTP QPEEDHGFAS SFGIENQMMA EVPPSEDNSW NAAVLSGNVH HDQIMVFTPF  120
TGTGEAAASD DGLEEEHHNA VAATLLQGNW DDGLLLNDWS CVQESECPHQ EAPPVQPMKL  180
LEPNVQQQPV AIQPTASHRS PASFPEATAM QFMKHEVVVN NPFLQPAMNS SQAEIPHQEQ  240
QKLQLPQKKQ GVHQKLQLKK GQQQQIKSTC CNQELQHTEQ KTDHKAPVGA EAVATAAAES  300
CPPRVKAPRL SHYRGVHYRG VRQRPWGKFA AEIRNKARQG ARMWLGTFDT AEEAAEEYDA  360
AAFKIRGSRA HLNFPLRASS LAAAAAATAT SSSSPTQNKT SSDLTSNGIM LSTKGSPNVV  420
SSSILPSSNA NSILLQDPPS YKMSPRGGEG LKDQMVVTAS REPGSDDDHF KIPTGDHITQ  480
QRMRSRSEQK STEADDLFPE LSSFELEDVA HKEMTTMTMS PPPSCIMETS EFFFGDDLEM  540
KEKLELQDLG AKYWEQLLSS SNSFESDITM ADIDVILAVS NPNFTSSSDG HLELFPDIFG  600
HENSPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-29314380268ATERF1
3gcc_A7e-29314380268ATERF1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-22ethylene responsive element binding factor 1