PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0067s0121.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 535aa MW: 57262.2 Da PI: 7.3996 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.5e-11 | 99 | 124 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C +G +C+F+H+ Sphfalx0067s0121.1.p 99 PGEPDCGYYMRTGLCGFGISCRFNHP 124 5789*********************8 PP | |||||||
2 | zf-CCCH | 37.6 | 3.7e-12 | 151 | 175 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++f++tGtCk+G++Ck++H+ Sphfalx0067s0121.1.p 151 GQPDCQYFLKTGTCKFGATCKYHHP 175 5799********************8 PP | |||||||
3 | zf-CCCH | 38.5 | 1.9e-12 | 199 | 222 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG CkyG +CkF+H++ Sphfalx0067s0121.1.p 199 KDCAYYMRTGSCKYGVTCKFHHPQ 222 68********************97 PP | |||||||
4 | zf-CCCH | 32.5 | 1.5e-10 | 360 | 386 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG Ck+G +C+++H++ Sphfalx0067s0121.1.p 360 PGQPECQYYIKTGDCKFGVTCRYHHPK 386 5789*********************96 PP | |||||||
5 | zf-CCCH | 34.6 | 3.2e-11 | 407 | 431 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C+f+ r+G+Ck+G++CkF H+ Sphfalx0067s0121.1.p 407 GSPPCNFYTRYGICKFGPTCKFDHP 431 679*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.9E-5 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.53 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-8 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-5 | 103 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-6 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.385 | 149 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 153 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 155 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 194 | 223 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 195 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-5 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-10 | 199 | 222 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 201 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 359 | 387 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-4 | 359 | 386 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-7 | 361 | 386 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 363 | 388 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 405 | 433 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-6 | 405 | 432 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 407 | 431 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 408 | 433 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 410 | 430 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MELYYGDPSP HVVGYASGVS ISSADWHRRQ QQQQQQQHHH RRRHHHGSSS SSSSSHVAAG 60 AAETAGLQER ILWRMTTLQQ PEEMDHGGGG PAASYPERPG EPDCGYYMRT GLCGFGISCR 120 FNHPSNGGNL AAALAAQGGS SRGGEYPERL GQPDCQYFLK TGTCKFGATC KYHHPSDKAG 180 SIGQVQINVL GFPLRLEEKD CAYYMRTGSC KYGVTCKFHH PQPAAMGALV SMSGSSLYAT 240 PATQSSSTPQ PYPAGLPSWP IAARAPYLQV PSTFAPVIVP PLQGVVSMTG WNTYQGPVNN 300 LPTPEEQQHS LGSRFPYGGL EMDAVSGYAP YIQGSSAMGL PVLQPQPIHV HKETVFPERP 360 GQPECQYYIK TGDCKFGVTC RYHHPKDRTT TAPTCVLNSL GLPLRPGSPP CNFYTRYGIC 420 KFGPTCKFDH PLRGLTYGSP ASLQTDIPVG GPYPSGSLLT VLTPSSSSEV PQEVSNTASP 480 SDEPASEEVS GCIPLRAIPD SAVMRTMAAS NLLAQGTRSE MAINSPATEI LDAS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373414.1 | 1e-158 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373415.1 | 1e-158 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373416.1 | 1e-158 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 1e-125 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2R6XC55 | 1e-170 | A0A2R6XC55_MARPO; Uncharacterized protein | ||||
STRING | PP1S102_155V6.1 | 1e-146 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-104 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0067s0121.1.p |