PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0067s0105.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HSF | ||||||||
Protein Properties | Length: 485aa MW: 53738.4 Da PI: 4.663 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115 | 4.8e-36 | 35 | 126 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d+++++++sws+ +nsfvv+++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g Sphfalx0067s0105.2.p 35 FLTKTYDMVNDAATDTIVSWSKGNNSFVVWNPPEFSQDLLPKYFKHNNFSSFVRQLNTYGFHKVDPDR---------WEFANERFVRGG 114 9****************************************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 +ell++i+rkk Sphfalx0067s0105.2.p 115 RELLREIRRKKP 126 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.4E-39 | 28 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.1E-61 | 31 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.08E-35 | 31 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.8E-32 | 35 | 124 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.1E-19 | 35 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.1E-19 | 73 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 74 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.1E-19 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MVPTQFGMNS EISLLPDAPA QPPMDGLQSN APPPFLTKTY DMVNDAATDT IVSWSKGNNS 60 FVVWNPPEFS QDLLPKYFKH NNFSSFVRQL NTYGFHKVDP DRWEFANERF VRGGRELLRE 120 IRRKKPATHS QQQQQQHDAD GALAPFTEVE KLGLEKQIEM LKRDKSVLLL ELVRLQEQQQ 180 NTEHELQVMG QHLQVTEQRQ HQIMAFLAKA VQTPGFLAHL VSQNGMATAA RRKRRLQKED 240 DGGEVEDSSD PPTPTDGQII TIQTKGEVLS QILQLLSPSD ASIPAIDNHH LQSLLKDYNS 300 ALAGDEGNNL NQQSGVTLMD VSTSGTEQLQ SEPVLTDLGS NEGIVQLPSS PTSDVARVAG 360 SDPMEPGSRS CQSGTRDLRD SNSDSIDLNS RGPGVSTEVE DVSSSVNSQA VVPRTNDVFW 420 EQYLTEEPEN TTNCNSETNN SQKSEDKAWE YTRANGRVPQ ARNWLESRPN VEISSHQMGQ 480 LAPG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 17 | 124 | 13 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 17 | 124 | 13 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 17 | 124 | 13 | 129 | Heat shock factor protein 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024382543.1 | 1e-134 | heat stress transcription factor A-1b-like | ||||
TrEMBL | A0A2K1LAL8 | 1e-132 | A0A2K1LAL8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S249_84V6.1 | 1e-133 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 9e-69 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0067s0105.2.p |