PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0033.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 699aa    MW: 78588.6 Da    PI: 6.8214
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-08493534240
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                           ++W++eE +ll +av ++++g   +W+ +++++g+gR+ +++
  Sphfalx0067s0033.1.p 493 KPWSKEEVDLLRKAVIKFPKGtsqRWEVVSNYVGTGRSVEEI 534
                           69************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.22E-2094175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1109.4E-2194198IPR001623DnaJ domain
SMARTSM002717.7E-1696171IPR001623DnaJ domain
CDDcd062573.17E-1397168IPR001623DnaJ domain
PfamPF002263.9E-1797176IPR001623DnaJ domain
PROSITE profilePS5007618.12197179IPR001623DnaJ domain
PRINTSPR006256.9E-7102120IPR001623DnaJ domain
PRINTSPR006256.9E-7120135IPR001623DnaJ domain
PRINTSPR006256.9E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.04487542IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-5489537IPR009057Homeodomain-like
SMARTSM007177.8E-7491544IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-7493537IPR009057Homeodomain-like
PfamPF002496.8E-7493534IPR001005SANT/Myb domain
CDDcd001676.54E-5494534No hitNo description
PROSITE profilePS512939.338637692IPR017884SANT domain
SMARTSM007175.6E-8638690IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-9639687IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-4640690IPR009057Homeodomain-like
CDDcd001674.24E-5642684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MPGAKDRLLL TYFASDIPAT LPLFVASNSL PTPAFHLEPA GVSFHALAFR ALGFDEELQG  60
DDESVAEKKD KSGSSPSAES YQFKGKKKSG DGPETQDHYA LLGLSHLRFL ATEDQIRKAY  120
REAALKHHPD KQAALLLTEE TEEKRQTKKE EIDQHFKSIQ LAYEVLIDSV KRRAYDSVDE  180
FDDEVPTDCG SDDFFKVFGP VFMRNGRWSV IQPVPSLGDD DSDIATVDKF YDFWYMFKSW  240
REFPHADEFD LEEAETREHK RWMERQNNKL REKAKKEENS RIRLLVDNSY KRDPRIARRK  300
EEEKAEKARK KEAKIQAKRE KEEEAARILE EEKLRKEEEE KRAAEEVATQ KKIKEKEKKL  360
LRKEKARLRT AATAVILKGL GVSEDDVENL CTSLDISLLK VLCDRLEGIT EIAGQAEYLR  420
NVISGLEPLS VMDSSATLAM KTAPQAAQIF SPLPPTSTGM KGSQTEVEKP PVEVRGQEKK  480
VTGVLNAGEK KEKPWSKEEV DLLRKAVIKF PKGTSQRWEV VSNYVGTGRS VEEILKAVKT  540
VLMQKPDSTK AFDSFLQTRK TGNVVINSPL STREDEAGDL QAGKAASKPV ANGSARAGEK  600
TQKGIEEKSG GKSETEENED SQKYTQSNGS VGNGAVSEQE LWSDIQEVAL VKAIKAFPKD  660
TDKRWDRIAS AVPGKTKAQC FKKFAELREN FRSKKTSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-201772963123Zuotin
5dje_B4e-201772963123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390803.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390804.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390805.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_024390807.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2K1JP220.0A0A2K1JP22_PHYPA; Uncharacterized protein
STRINGPP1S128_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.12e-99DnaJ domain ;Myb-like DNA-binding domain