PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0062s0101.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 489aa MW: 52425.7 Da PI: 7.2567 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.8 | 2.9e-06 | 153 | 175 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+f+++ G C++G+ C + H Sphfalx0062s0101.2.p 153 KGKPCNFWLK-GNCNRGEDCMYLH 175 5689******.*********9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.49E-7 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.15 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0074 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 38 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.029 | 39 | 59 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-5 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 151 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 153 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.017 | 156 | 175 | No hit | No description |
SMART | SM00320 | 0.0019 | 182 | 221 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 3.91E-49 | 184 | 479 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 2.9E-9 | 186 | 258 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF00400 | 0.033 | 188 | 221 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 23.335 | 189 | 392 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 12.346 | 189 | 230 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 208 | 222 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 8.0E-7 | 208 | 222 | IPR020472 | G-protein beta WD-40 repeat |
Gene3D | G3DSA:2.130.10.10 | 6.2E-39 | 259 | 478 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 0.0038 | 261 | 299 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.16 | 265 | 298 | IPR001680 | WD40 repeat |
SMART | SM00320 | 2.5E-5 | 306 | 343 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0022 | 310 | 343 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 14.017 | 313 | 352 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 330 | 344 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 8.0E-7 | 330 | 344 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.3E-5 | 346 | 383 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 5.9E-5 | 347 | 382 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 9.339 | 353 | 392 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 8.0E-7 | 370 | 384 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 160 | 387 | 437 | IPR001680 | WD40 repeat |
SMART | SM00320 | 2.5 | 440 | 477 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MVAGMDVDDG PARVHRKRHT RPVTTGGGRT VGKDHNPQIC RYWQEGRCLK GEDCQWLHPG 60 SVGTTGRVAS LGNNGRRTTS NLIDSNRSSN RAGWGSVGGG GGGGFSTGNN QGRPRNVSAS 120 WGRPRNVSSR PGQRDRVYSE GGGGDGAPHR GTKGKPCNFW LKGNCNRGED CMYLHAHTTA 180 LDVEMMTQLI GHEKAIRAIE MPQGASQLYT CSQDESVRVW DCTTGQCASV VQMGGDVSAL 240 LSAPGWLFIG LPDEVQTWNM QTSAQQSLSG PKGQVHALAV SEDGLLFAGT QDGTILEWKF 300 NPITNFFEPA ASLSGHSGPV ITLLFIGNRL YSGSTDKSIR IWDIGSGQCL QTLEGHSDVV 360 MDLLCWEQFL LSCSLDGTIR VWAVNAAGQL DTTFTHPEDE GQAEPRNGAL KMCGCNDGAG 420 KPVLLVSYND NIVRLYDLPM FSERGQLFSR EEVRALQVGP GGLLFSGDSR GTVKVWRWTG 480 VQLAAGGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-22 | 189 | 480 | 6 | 324 | Tako8 |
6g6n_A | 2e-22 | 189 | 480 | 6 | 324 | Tako8 |
6g6n_B | 2e-22 | 189 | 480 | 6 | 324 | Tako8 |
6g6n_C | 2e-22 | 189 | 480 | 6 | 324 | Tako8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391880.1 | 0.0 | zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | A0A2K1JM60 | 0.0 | A0A2K1JM60_PHYPA; Uncharacterized protein | ||||
STRING | PP1S374_36V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-131 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0062s0101.2.p |