PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0060s0080.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 1013aa MW: 111692 Da PI: 6.711

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0060s0080.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.7	1.9e-39	183	259	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+adls+akeyhrrhkvCe+hska +v+++g+ qrfCqqCsrfh lsefD++krsCrrrLa+h errrk+q Sphfalx0060s0080.2.p 183 MCQVEGCKADLSTAKEYHRRHKVCEFHSKARNVVAHGRVQRFCQQCSRFHVLSEFDDGKRSCRRRLAGHKERRRKSQ 259 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.1E-35	176	245	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.094	181	258	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.18E-37	182	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-30	184	257	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1013 aa Download sequence Send to blast
MTSSANTSDH EGDPNWTTVN YGHLEAWGNL HPSTSATKNV LGSSGIPGLA PTGRAGLQSN 60 LLSSFAHQRY LESYGGMQHL NPNMVKREPG SQAGNQHSIG VSMNGALFFM ILYDLMQRAL 120 TKTSHATTVV AQDNARSYTE RATVATQDKA RSYTEQASGS DFIPFVEGRL EESAGSPGSQ 180 VPMCQVEGCK ADLSTAKEYH RRHKVCEFHS KARNVVAHGR VQRFCQQCSR FHVLSEFDDG 240 KRSCRRRLAG HKERRRKSQL RALTWDAAVE CIWMKGEEDS DLSGSPASDE QPASAKNNLQ 300 LNTPAATFGR VPKEDQHSSQ PGMQQTSSQP RGLERTIWRN FHDSETASVA PVSVEDVRKA 360 ELSTKDKVGF VTRKAKRAAE TALAHTAFRQ AYEERYLQEK DQHQETSGLE SPSYSRIGFP 420 GPTRVTDGHL KQENQLSTIG IGDTSENCFQ TLLPEMENDS IFTMGRKGKF EGANSVEFLF 480 EQAEDMSKVV GVGLQWSKVV VTKQFGVVVQ HIGEHLWSDL WKETSFSPMR IPILKPPTKL 540 SMFNLTPETS SKRFGVGLVG SRFQSRCVYV EDNEKQTSEM FPFIFELAEK MGLSENAKES 600 NFQHPSRISS EAVEGEKNDH GGPLLETMEG GETDQGDTSS EPMDPMDVGE SSQGGNSGEP 660 MEGLESGQGG PSSGPTEVGG QSDQQSSPFQ LRFQSFQAKG PQDSNENKSL TVIVIPEVGG 720 TFYEGLSNQQ VQPDCRIKFA AIAPWLKFKF EILGGERKIT TMTKTACDLG GGELQLHEDW 780 NLGYCHDNIT ISLTCADPQA VRISARSVVA TNDTKRIMTE TITGSTSRAN QVSGQANVQV 840 QIPVVPIGVQ AQGTLDVTDT IVNSRVLVII IKSSKTQSAG FDVNEVGCAS SLVFSFVYSE 900 KIVDVMARGQ RHFVDAGISK TLCPPIIGKW IPLDREDACL YTFKTERNIY SIRSLRRSHA 960 ERKEPISFMQ QRYEVPFFIN HAMSHIHCYE NTLLQGPGLQ TLPKVVTKFP KF*

Sequence ? help Back to Top

Protein Sequence Length: 1013 aa Download sequence Send to blast

MTSSANTSDH EGDPNWTTVN YGHLEAWGNL HPSTSATKNV LGSSGIPGLA PTGRAGLQSN  60
LLSSFAHQRY LESYGGMQHL NPNMVKREPG SQAGNQHSIG VSMNGALFFM ILYDLMQRAL  120
TKTSHATTVV AQDNARSYTE RATVATQDKA RSYTEQASGS DFIPFVEGRL EESAGSPGSQ  180
VPMCQVEGCK ADLSTAKEYH RRHKVCEFHS KARNVVAHGR VQRFCQQCSR FHVLSEFDDG  240
KRSCRRRLAG HKERRRKSQL RALTWDAAVE CIWMKGEEDS DLSGSPASDE QPASAKNNLQ  300
LNTPAATFGR VPKEDQHSSQ PGMQQTSSQP RGLERTIWRN FHDSETASVA PVSVEDVRKA  360
ELSTKDKVGF VTRKAKRAAE TALAHTAFRQ AYEERYLQEK DQHQETSGLE SPSYSRIGFP  420
GPTRVTDGHL KQENQLSTIG IGDTSENCFQ TLLPEMENDS IFTMGRKGKF EGANSVEFLF  480
EQAEDMSKVV GVGLQWSKVV VTKQFGVVVQ HIGEHLWSDL WKETSFSPMR IPILKPPTKL  540
SMFNLTPETS SKRFGVGLVG SRFQSRCVYV EDNEKQTSEM FPFIFELAEK MGLSENAKES  600
NFQHPSRISS EAVEGEKNDH GGPLLETMEG GETDQGDTSS EPMDPMDVGE SSQGGNSGEP  660
MEGLESGQGG PSSGPTEVGG QSDQQSSPFQ LRFQSFQAKG PQDSNENKSL TVIVIPEVGG  720
TFYEGLSNQQ VQPDCRIKFA AIAPWLKFKF EILGGERKIT TMTKTACDLG GGELQLHEDW  780
NLGYCHDNIT ISLTCADPQA VRISARSVVA TNDTKRIMTE TITGSTSRAN QVSGQANVQV  840
QIPVVPIGVQ AQGTLDVTDT IVNSRVLVII IKSSKTQSAG FDVNEVGCAS SLVFSFVYSE  900
KIVDVMARGQ RHFVDAGISK TLCPPIIGKW IPLDREDACL YTFKTERNIY SIRSLRRSHA  960
ERKEPISFMQ QRYEVPFFIN HAMSHIHCYE NTLLQGPGLQ TLPKVVTKFP KF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	173	257	2	84	squamosa promoter binding protein-like 4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	8e-37	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Sphfalx0060s0080.2.p