PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0058s0056.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 376aa MW: 40143.4 Da PI: 10.0843

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0058s0056.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.8e-14	89	133	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Sphfalx0058s0056.1.p 89 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVQTRTPTQVASHAQKY 133 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.878	5	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	19.91	82	138	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-17	84	139	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-18	85	137	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-11	86	136	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	86	132	IPR009057	Homeodomain-like
CDD	cd00167	7.93E-10	89	134	No hit	No description
Pfam	PF00249	1.3E-11	89	133	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MARGCSYCGH NGHNSRTCPD RGVRLFGVRL TDGVMRKSMS MSNLSHYASA NNPPSPPEQS 60 GSGATPDGYV SDGLVQTSNN ARERKKGVPW TEEEHRLFLL GLQKLGKGDW RGISRNFVQT 120 RTPTQVASHA QKYFIRQSNL NKRKRRSSLF DIVSETGLSP MMEEPIPNAS SDMSTPLHQL 180 SLGSSSKFTP GLYYDSHRFG MPVRPFGLPT HMEAPVAVPV MSLGNGLLGA STEQSPDGVG 240 LVFGPDAARP MLQQPVAALP SSGGLPPNGP LGISNIPYAF PMWPGPTGQA YGRPTNSPSM 300 NSKLVRPTAS VPTAPVKIDE AKEMSHLSLG LSPPEPSQLT LKLLDPPSRH SSAFQVNSSF 360 NSSSISPSSN AISVV*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MARGCSYCGH NGHNSRTCPD RGVRLFGVRL TDGVMRKSMS MSNLSHYASA NNPPSPPEQS  60
GSGATPDGYV SDGLVQTSNN ARERKKGVPW TEEEHRLFLL GLQKLGKGDW RGISRNFVQT  120
RTPTQVASHA QKYFIRQSNL NKRKRRSSLF DIVSETGLSP MMEEPIPNAS SDMSTPLHQL  180
SLGSSSKFTP GLYYDSHRFG MPVRPFGLPT HMEAPVAVPV MSLGNGLLGA STEQSPDGVG  240
LVFGPDAARP MLQQPVAALP SSGGLPPNGP LGISNIPYAF PMWPGPTGQA YGRPTNSPSM  300
NSKLVRPTAS VPTAPVKIDE AKEMSHLSLG LSPPEPSQLT LKLLDPPSRH SSAFQVNSSF  360
NSSSISPSSN AISVV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390573.1	1e-152	transcription factor KUA1-like isoform X1
Refseq	XP_024390574.1	1e-152	transcription factor KUA1-like isoform X1
TrEMBL	A0A2K1JQS5	1e-151	A0A2K1JQS5_PHYPA; Uncharacterized protein
STRING	PP1S70_203V6.1	1e-152	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-63	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0058s0056.1.p