PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0055s0111.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 701aa    MW: 79208.7 Da    PI: 6.6816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0055s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.7e-141761799
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          v+p  f++ +g++   +kt +l+ + +++W+v +   ++++++ ++ GW+ F+ +++L+ gD+ vF+l+g+s+f   vk+f++
  Sphfalx0055s0111.1.p  1 VIPAAFIKLYGND--VGKTAILQGPGSQVWQVGI---GRPKWVAFRVGWRTFAADHDLEKGDINVFTLTGKSQF--SVKIFDN 76
                          799****999877..4679***************...9999****************************99999..***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023627.7E-11176IPR003340B3 DNA binding domain
SMARTSM010190.0033177IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-14176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.253177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-15177IPR015300DNA-binding pseudobarrel domain
CDDcd100178.68E-14175No hitNo description
SuperFamilySSF1019368.83E-14313395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-10314395IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.177320411IPR003340B3 DNA binding domain
SMARTSM010190.0076320410IPR003340B3 DNA binding domain
CDDcd100177.38E-11323395No hitNo description
SMARTSM010191.1460551IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-9480549IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-10481549IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-8509549No hitNo description
PROSITE profilePS508638.839510551IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
VIPAAFIKLY GNDVGKTAIL QGPGSQVWQV GIGRPKWVAF RVGWRTFAAD HDLEKGDINV  60
FTLTGKSQFS VKIFDNKTGT EKLSALEHKE RDDEEMELQL HMKKLCFDIA ESGIMDENPP  120
VQALESLCSS ESKHVQDSSR GKAEALDSPG AQWNLNEPYL HEPSDHLCPA NDEYGETITA  180
TQEIQLLAHD QLLQVKETDS DDVLQCQTLL GKLPHDAAGE DLNTNKEHLK SSNSMRMKRP  240
VVETLRDIMH TDVAFRQSFQ AHSTSNTQNI QPMINQAGEL HREHDKVASH LILYPGLVMC  300
REKAMELGRF TVLKSDKPCH LVVLRPFHVH GRAFLRFPVT FGKHFLPMKT VPMHLIDASG  360
NQWPMVWLQD NETHMGFTWG WREFSLAEDL SDGDVHSSSN SERCCKCSKR HKLEPGTECE  420
TYMEPGIPQD DTTRNLECDG IAKQDDRPGK LEPHHWGATN VDPVFQEQKL QECHQSITMQ  480
QAHIPCEATD LKLQDAVGQQ THAFLSGEVL TAGWQQFSLP HLLEEGDTCV FELITNKTED  540
LTFMVHIFRV VEVYHSKVQW QDHYMILSRD KKNLEDEDAT SCLFPGLGST NALCIAVQKC  600
MEMTTTTTIC DSRVRGTLEE LAKVNQAARS SNHLLTRITI PSYSRRIHEQ KKKKKKKKKK  660
KKTSNNQISK QSRKGNNTNL QAAERMVRAF SAGFSSCYLD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1652661KKKKKKKKKK
2653661KKKKKKKKK
3655661KKKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-09B3 family protein