PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0054s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 454aa    MW: 50955.5 Da    PI: 5.5493
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0054s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.1e-10394441347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           +W++eE e l++ v ++G+g+Wk+I ++     + Rt+ ++k++w++ 
  Sphfalx0054s0001.1.p 394 KWSEEEVETLKREVGKYGKGRWKLILQKNYdvfQDRTEVHLKDKWRNM 441
                           7***************************999**9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.145387446IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-11388442IPR009057Homeodomain-like
SuperFamilySSF466898.97E-14389444IPR009057Homeodomain-like
SMARTSM007170.0054391444IPR001005SANT/Myb domain
CDDcd116602.47E-16393443No hitNo description
PfamPF002492.8E-7394441IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MARERSSDVA AACRKLMKEE TAGERLVRVW IWEYVLKFSS DERLIRELMD CLAFPNDVPR  60
LKQMVLLKEL SGQIGRGLVL QKTLDLLEGM REVMCDARRV ADSGALVEDE VRQERKRVKG  120
PTDGTRIPGA ESDCGVAGGN GVDGGQEKDW DDLVDLITEV REEVQDEPEV ESSVARKRKY  180
KEVENKLKTF IAKAWIELGP VFLEKVEVAV VSGLYKGVTG NHLETVLSKG KAAATAVDEE  240
ELADKVVEEV ANKEVVEVRA ADLEKGRQGL QESVAQLEKL VKDPLPAVLE RTDANGGNVS  300
SQVPASTSGR EERTAARSTR RNFLDPHPSA RSHEWGDDEI AESPPTDSPS ASRRVRLPPL  360
NSAPRMSPLV EIQTANQPRG ATSRGNRRRR KNHKWSEEEV ETLKREVGKY GKGRWKLILQ  420
KNYDVFQDRT EVHLKDKWRN MEKYEGIRED DLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-08MYB_related family protein