PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0053s0045.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 383aa    MW: 42008.2 Da    PI: 4.5745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0053s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18140188355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ykGVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aa+a++aa  +l+g
  Sphfalx0053s0045.1.p 140 YKGVRMRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAAVVALRG 188
                           9****998.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-11139188IPR001471AP2/ERF domain
SMARTSM003801.0E-36139202IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-21139197IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-31139198IPR001471AP2/ERF domain
PROSITE profilePS5103222.958139196IPR001471AP2/ERF domain
CDDcd000183.98E-31140198No hitNo description
PRINTSPR003672.4E-9140151IPR001471AP2/ERF domain
PRINTSPR003672.4E-9162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEAISLRARS TSSAISAEPR IQGVLLEEGS LHVEERANLA CGAVQDFGFD VLGFEYKYLL  60
LELGGDGVFY GAGGSHAESV TMMVKLKTSS SLSAAKRVEA SLKRTKSSPE TSGRIQKLQI  120
TSSTSSTTSS SPNAAGKTAY KGVRMRTWGK WVSEIREPNK RSRIWLGSFP TAEMAARAYD  180
AAVVALRGPN APLNFPESPP TLQIQDTVSP RAIQAAAAAA AASAVPPAAA LHVINPVQEH  240
SQEQHSSNII SSESDEEEEE EEEDPDPDHH KSSDHQQISL EQESRLTSTC LQAAQLPTPL  300
EWIEAEFGQF EKSEEQNMDH HHYFPEPSIP EDEMDLLLKH HHDHHDQHPE DSGFQFQAAT  360
HELQELDEDD SSEVEPFLWS YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15140196360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-151401961572Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.11e-20related to AP2 9