PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0050s0100.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 592aa    MW: 64421.7 Da    PI: 6.7912
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0050s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18474569294
                           EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                            k+l psdv+++gr+vlpkk ae h   ++ +e++ l +ed  sg+ W++++++  ++ks++y+l+  + +Fvka++L+egD +++++ 
  Sphfalx0050s0100.1.p 474 HKELRPSDVSNLGRIVLPKKEAEYHlpFLQAREGMSLAMEDfDSGKIWTFRYRFwpNNKSRMYLLE-ITGDFVKAHNLQEGDLLILYR- 560
                           58999*****************999**888999********9999*******99777777777777.9******************94. PP

                           SS.SEE..EE CS
                    B3  86 gr.sefelvv 94 
                            +  ++++vv
  Sphfalx0050s0100.1.p 561 -NaLQGNYVV 569
                           .446666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-27470569IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-21472565IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.2E-15473572IPR003340B3 DNA binding domain
PROSITE profilePS508639.869473581IPR003340B3 DNA binding domain
PfamPF023629.0E-15475569IPR003340B3 DNA binding domain
CDDcd100179.17E-24475570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MEVVQPRLNM FMSSSSSNSS LLKSMESPPA ARSSSLLLGG AQGPAAAWSD LAVMRSDVMD  60
QGSQAAAPAT RVVLQQHMDA ATEFDPLATN WLDSHPSSDE LADVVEHWPN LQPFTSPLMA  120
MENSPSCSTG NHEQDVVVRG TMSVVTSSSA AAACDAPEEL SACNFSISQQ HCHHHQLLMV  180
NNRLHGSVPS SSSSEQHLSP RSEMQLPAAA AAHAPVEFTT MSKCHKFEEP GSIGSFSYGS  240
LLQQPEEEEE DPRWRMTLPD FQHWQQLCLQ PQYTDFCNSR QQVLQPAAIA SFFRPMPDIP  300
YDAQDARDLS TYPTSSSSSS AAAAASATHG LQAAVPLPPS IPPHLLHAAS EPGSYLVAGL  360
GLEQAVIGSS PLQSVPNDFK AAAATIPASC VSKQAVAITM RAARKSRMAA RQRSHSSISR  420
HHNRNAASLM GPCTSSSRVL QSCHLKKLQM QQDLSFAVTQ GQGNNMDALV FLLHKELRPS  480
DVSNLGRIVL PKKEAEYHLP FLQAREGMSL AMEDFDSGKI WTFRYRFWPN NKSRMYLLEI  540
TGDFVKAHNL QEGDLLILYR NALQGNYVVR GEKHIVLEGA RKPNSVKAKS M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-374715733105B3 domain-containing transcription factor FUS3
6j9b_D3e-374715733105B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-41B3 family protein