PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0050s0094.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 969aa    MW: 104299 Da    PI: 7.2592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0050s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07875924147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sphfalx0050s0094.1.p 875 RCPFSVAEVEALVHAVEKLGTGRWRDVKLRAFdhaKHRTYVDLKDKWKTL 924
                           5689999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.117870929IPR017930Myb domain
SMARTSM007171.7E-6874927IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-9875925IPR009057Homeodomain-like
CDDcd116605.47E-17877926No hitNo description
SuperFamilySSF466897.57E-15877956IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MEARGRRFSG GFPGYDGPAL PRAMRSSRGR GEAARRQSAV VARTGFFELL ATVAGRILQD  60
TGINSGQCNK ANNVNEQESL KENLPSEIDS QVSSVGSVTN HVVIDKRQSA SVPFHLVAPS  120
QLGMNEEEVQ LRVAGKTEVV AGQTQNCFQS SEAAVWSPSQ EEQSNVVVKE VTPVDEDSAA  180
APVNITSSPP ADQKFLPPPC DSDLSTAKFD PSPGSPSIEI KEITSISELQ GICTEMKQFP  240
DDEMQGHFEM IEMMVSEQIM EGEKQATLGF AAGDITSSSM KFKQLPTMVQ EKPTTETNVI  300
SVEKGGKESR GYLEAMGEVM VQVLEAPIAV MTEADSLIPE FQMHCQSSES GDVMKLTSPM  360
DLGEDKDDEN ASMEDKGIVV DEKIPPSVAT SGCSKVAPPA GLAEGQGMTR PVLKRVICKK  420
DGKMSRMEKV CSSQCLVPET NLKDPYRKGL ESQKNAEVVK CIRTIETRRR KRHHTDMESM  480
DSGSSEEAGF EKERLSSGGR IAPGLTRQQR TRGSSSKRKN NVVDGSCNST ELHLNTVNLM  540
EMGYEYVDGE PPAAAAKLRS AKAASVASSP TGKGSSKLTS KKSLEPHVKL SIKSFTVPEL  600
FVDLPESASI LNLKRAVMEA AMNLLGGGLR VRVLLQGKKV PDEGATLLQM GISRSAKPES  660
LGFMLEPSPV PTSTSATAAE DPLLVLSHAN NPPLPRYPVF GVQGLSGSVE RGGRCCGKGR  720
STRASGMVVD ADPTTFVAAP PMPADHQQGY IDGKQPSGLK FPMTPDETLK GCNGMKTKLT  780
HLNERMAVSP HSTRVAAAGA LAAIRAQADA NRRAKNELDP PSTVTTNMSQ DSLGGESGAI  840
ILHPGVGTGE NMPGMALVPV RQKTGALDVG KRRMRCPFSV AEVEALVHAV EKLGTGRWRD  900
VKLRAFDHAK HRTYVDLKDK WKTLVHTARI APHQRRGEPV PQELLERVTR AHSYWSAQAA  960
KQQAELDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-488599651107Telomere binding protein TBP1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402291.10.0uncharacterized protein LOC112295236 isoform X1
RefseqXP_024402292.10.0uncharacterized protein LOC112295236 isoform X1
TrEMBLA0A2R6X1880.0A0A2R6X188_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.17e-40TRF-like 2