PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0048s0033.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 1046aa    MW: 114149 Da    PI: 5.1677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0048s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024405427123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C++C+k F    +L  H +tH
  Sphfalx0048s0033.1.p 405 YMCKICDKEFDGAKSLSLHKKTH 427
                           89********************9 PP
2zf-C2H212.10.0006471490221
                           EETTTTEEESSHHHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                           +C+ Cgk F ++  L  H+r
  Sphfalx0048s0033.1.p 471 TCTECGKEFGSWKALFGHMR 490
                           6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.29E-9405427No hitNo description
PROSITE profilePS5015710.45405427IPR007087Zinc finger, C2H2
PfamPF139120.094405429IPR007087Zinc finger, C2H2
SMARTSM003550.0063405427IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
SuperFamilySSF576675.29E-9465492No hitNo description
PROSITE profilePS501579.93470497IPR007087Zinc finger, C2H2
SMARTSM003550.0064470492IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-7472494IPR007087Zinc finger, C2H2
PROSITE patternPS000280472492IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868723750IPR007087Zinc finger, C2H2
SuperFamilySSF576672.0E-6723745No hitNo description
PfamPF139127.2E-8723747IPR007087Zinc finger, C2H2
SMARTSM003550.19723745IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280725745IPR007087Zinc finger, C2H2
SuperFamilySSF576672.0E-6822849No hitNo description
PROSITE profilePS501579.702827854IPR007087Zinc finger, C2H2
PfamPF139122.6E-12827851IPR007087Zinc finger, C2H2
SMARTSM003550.43827849IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280829849IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MMDKSYGEEK RSSSMDGGVS VQLVTEEEEE DMMEEASTSP VQIIQGGGEN HHHYHLHQKT  60
TSPQCCSTCK NNSAGFLSSS LMKICSHCST NHHSQEEKSG TWPTTKTEGG GGGGGGNGGG  120
GEIIIEGEED GVANGVISGG GATIVVLDDQ GPGSLCSDAE VEELLLPPRA GILSSVEEED  180
AAAAAGTAEL IRCKSTVVDQ DEIHAKNSMC SQEEEEEQKN SMSHLCQLYK RGELGFGRGP  240
LGAGSMMQQQ QQSHNNNNKQ LNSITMDHEN HNASSFSVEV GQEKEQQLSS SIGQVSQLRN  300
LHVDSGVSDP DSFKDETTSP LPCCPQSQGV ESSCIQSVSR QLNFQQVEFK DHNKAGSPPS  360
LVAISSGAAL SCEDEDLWDE HEEDAGSTKV SSSLEENNNG STHDYMCKIC DKEFDGAKSL  420
SLHKKTHPQY TLRRNPKRSR RFIDQDYAVE VSAAAAPAKK MSTMSEDKVK TCTECGKEFG  480
SWKALFGHMR CHPEREWRGI QPPDTITHQH GRMNNNASHP PSRRKKPPPN VIVTADSDSE  540
SETESRRGSR KASDNESDTE SIEAAYMNGD MQQSVRNWQK GKRTKRLRQS VRSLQAVTSY  600
APENSEAATT PTETRHQREI IDALMLLKAV ESERKRSALT APPQEPQVTD KEDVVLHHWS  660
GGKAEEVEQE DHVSRSERNC HKEDKRSAVV KKEAEDAYPS EEDEDGANEF ETGMQGVGPR  720
MKYECTTCKR IFKSHQALGG HRASHKKVKG CYARTNVGEG GAQDQSPEED ITDDEAMNTE  780
NIELLPPYIQ DASHTSEQED HKPCHYLAVA KDDNEEMFSI ARKSKGHECS ICHRVFNSGQ  840
ALGGHKRCHW GGTTASTSAP SEPYSGIRTN NQQQMSALPT TLAGHHQVSN PKREVLEREL  900
DLNMPAPESD DFVEQVGSSS AHILPPSLGH SNSYIPLLSS PFFSMAKKYA SSSPFQDSVE  960
KRHHLPNNSR DQYGFQAKDM PSSVDDNTPE QATASGGCKS ETGSLGAGDQ GLDNLQNFGQ  1020
FGQSLKATCH NADVGPEPQV PLLLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-21C2H2-like zinc finger protein