PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0043s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 650aa    MW: 71697 Da    PI: 5.3688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0043s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.54.9e-22383441259
                           --SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           dDg++ W+KYG K++++s+f r+YY+C  ++C +kk v+ +++dp+++e++Y g+H+++
  Sphfalx0043s0004.1.p 383 DDGHRsWKKYGSKSIQNSNFCRGYYKCVLKNCDAKKMVQATDKDPSLFEVIYMGTHTCS 441
                           688744***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-22378442IPR003657WRKY domain
SuperFamilySSF1182909.29E-21380442IPR003657WRKY domain
SMARTSM007748.6E-23382442IPR003657WRKY domain
PfamPF031062.9E-20383440IPR003657WRKY domain
PROSITE profilePS5081114.929389443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MDPDGYSLNQ MMRIAGRRNS WWDASADDGQ CSSVEKIQEI LSKARNDQED LWKTIVTSST  60
WYSSSEFEEP VASTSSGDHE QVRQVEAAAC SRDQLNFPRR ISRPPMTAET ENSLDWSLRR  120
MEEFNAAASG SQTSACPSTL PITLEEVPSQ QPAMRLHHPS LQLGVHGMIS KLELQPPLNP  180
RLLQRTGPHF SRNLVSACNS LSNIPATTWT ALAAAGDDLL SMVELAPDSE AHIQRHNLEG  240
IPAPGMEREC CSPGIGGADS AMMEVAMGSD SKNHQADLKK VVMTSPIIPR SFLSSLLHDG  300
DHIIPEENKY VAQRRKRNRR TSVDTSNGQS SAMSSRRTKR IGTKRDFTRE AASDGEQIPT  360
RVVRYQRLQK PAGGIHIQRA IPDDGHRSWK KYGSKSIQNS NFCRGYYKCV LKNCDAKKMV  420
QATDKDPSLF EVIYMGTHTC SSSSDDTKDH LKKRQREDVD PPALVILEPP ADHDAAPMSQ  480
LLQPSCSKGA LDIVMDHQYS PTKPPTTTTT TTSSSCGDDD QAAACPITAD PENSTSEGMI  540
SHRKHEIHEM DQDIADGLAA TTSVTSWMPK LDDAACTVGE LCAASSITTA DDLEFCHMQQ  600
QQLLHDAADQ DFNNFQDLMS DWLDLMDISC QINTLPVQLN GSDYAFHQY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-15WRKY family protein