PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0041s0122.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23354.1 Da PI: 5.3585 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36 | 8.6e-12 | 26 | 56 | 17 | 47 |
HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgkly 47 r g++KKA+ELS+LC++ v +i+fs+ k + Sphfalx0041s0122.1.p 26 RVGLIKKASELSILCGTHVGIIVFSEARKAF 56 679**********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.0E-5 | 9 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-7 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-11 | 26 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.601 | 26 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-12 | 26 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-7 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:1.10.601.10 | 2.5E-4 | 75 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGGEQRSRSE EKRIQVCVRC ASPSARVGLI KKASELSILC GTHVGIIVFS EARKAFSFGH 60 PCVDYVIEKT LLMRECSDDD NDDDDEEEEE ESKKKGDSGG GTGSSRKQRK NRDMIAEQKS 120 VAVSSGIHEL QYVQQRIDAL YQLLVRRASC LQHQQQQIAA VVNSTPILFN EDHDQSQFLH 180 LELAPDPSCS TLTTNAAARQ QIYDLQQQQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | RKQRKNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-14 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0041s0122.1.p |