PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0039s0082.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 725aa    MW: 77908.7 Da    PI: 6.6389
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0039s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.5e-15486579294
                           EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           +k l psd +++g ++lpkk  e h  + + +++ +++ed  +  +W+++++y  +++s++y+l+ G+ eFvka++L+egD ++++  +
  Sphfalx0039s0082.1.p 486 QKDLQPSDIGSLGHIILPKKESELHlPSLTLKGVFISMEDfDTRMTWSFQYRYwpNNRSRMYLLE-GTGEFVKAHDLEEGDLLMIY--K 571
                           68899*****************9999445567899*****55669********655666566666.*******************9..4 PP

                           SSEE..EE CS
                    B3  87 rsefelvv 94 
                           ++++++v+
  Sphfalx0039s0082.1.p 572 NRQGNFVI 579
                           56664455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-24479579IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-19483579IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-20484580No hitNo description
SMARTSM010195.6E-16485585IPR003340B3 DNA binding domain
PROSITE profilePS508639.686485585IPR003340B3 DNA binding domain
PfamPF023624.1E-12487579IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MVEKAESPGV MVTQVKMPRD VPSGQGWADL ACALQDLKEK NSMAASWRQR GREEEGPSVA  60
AAAAAAVQMT HQPGVTDQQN LGSGDLSLQL GSSASYSTPS SSSNSRASAD QYDAPPTNDL  120
SPDDLSFLQD VDVRSMFKKV TVNATLLNHA IERLGGGSKG MKALLGYIKL WVKDKKNTQF  180
SNSQCMESLQ KLDQAPAAET LQLAPAAVTL QAPAFAASST GVLDYNVSPH AGGHWTTTTP  240
LPGLWREQVT NRDIKANNNG SNGLKRPLSQ SFEPLLDQSP EDGAHLLHHN AKVCKTYGGS  300
FADTVDMNAG FSSSRSEDMV CSEMTGLTTC NLATTVRSIA GTDANVLAHD VLIHNNNNNS  360
HMAVNQPLVA SSLQQKGVGG FRLVDAADNN SSSSFLSPAA SKRAARKIRM ARQRRSTLSM  420
GSHSVSQGAI SSLGCGSCTG LLPGVAGVIS DTHQGNSQIL LPRMMMMPVR NKGQAWKTDS  480
LHLLIQKDLQ PSDIGSLGHI ILPKKESELH LPSLTLKGVF ISMEDFDTRM TWSFQYRYWP  540
NNRSRMYLLE GTGEFVKAHD LEEGDLLMIY KNRQGNFVIR GKKKGLCSEA CVPTTTTSTT  600
TAVHLPNNNN THSLARVPFD GGITVKKAEE ELPNDGKKNL HRNVPLVEDC SSYKPVEPFD  660
IFLQEVMQGI ENESEQCGEV LSQLERFPSL DPDVSVDDIL GLTFAGGSGS GGISSVVPKI  720
EPAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-314815831105B3 domain-containing transcription factor FUS3
6j9b_D2e-314815831105B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-34B3 family protein