PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0039s0042.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 523aa MW: 55107.5 Da PI: 6.9026 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.7 | 5.2e-10 | 94 | 119 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +G +C+F+H+p Sphfalx0039s0042.1.p 94 GEPDCVYYMRTGLCGFGQTCRFNHPP 119 5799********************97 PP | |||||||
2 | zf-CCCH | 36.2 | 1e-11 | 139 | 164 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ Sphfalx0039s0042.1.p 139 GQPECQYYLKTGTCKFGATCKYHHPR 164 789*********************96 PP | |||||||
3 | zf-CCCH | 38.9 | 1.4e-12 | 186 | 210 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG CkyG +CkF+H++ Sphfalx0039s0042.1.p 186 EKECAYYMRTGSCKYGVTCKFHHPQ 210 579********************97 PP | |||||||
4 | zf-CCCH | 35.8 | 1.3e-11 | 348 | 374 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G +C+++H++ Sphfalx0039s0042.1.p 348 PGQPECQYYMKTGDCKFGITCRYHHPK 374 5789*********************96 PP | |||||||
5 | zf-CCCH | 26.9 | 8.3e-09 | 396 | 419 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C f+ +G+Ck+G++CkF H+ Sphfalx0039s0042.1.p 396 APPCTFYTHYGICKFGPTCKFDHP 419 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.0E-5 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-7 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.732 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 138 | 164 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 140 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 143 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.033 | 183 | 211 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 183 | 211 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 185 | 210 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 186 | 210 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 189 | 209 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.774 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 349 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 351 | 375 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.662 | 393 | 421 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 393 | 420 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-6 | 396 | 419 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 397 | 421 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MEYYAPAKGA PSSFVGLEGG SVSDSTGVPA VLGSIPYDDW HVKHGVPSPG STAADTGVEG 60 LSEAVWQMTI QSQEGSGMDA VAGGQPGQFP ERLGEPDCVY YMRTGLCGFG QTCRFNHPPN 120 RKLATAIAQG KGDYPERFGQ PECQYYLKTG TCKFGATCKY HHPRDQAGST GRVQLNVVGL 180 PLRTDEKECA YYMRTGSCKY GVTCKFHHPQ PTTFLSPVYS TTGAPTSPAP QLYPQGVPSW 240 PIARAPYLHP RLQGPSSYSP VVLPPHQGVV SVPGWNTYQG PVGPISLSEA QQHPVGTSYV 300 YGALQQPDSG SGHGTYAPYL HGSSAMGLPA TQPHNINGQR DTIFPERPGQ PECQYYMKTG 360 DCKFGITCRY HHPKDRAIPS PTCVLSPIGL PLRPGAPPCT FYTHYGICKF GPTCKFDHPL 420 GGLTYSPSAS SLADMPVAPY PTGFSPTAVG ASSSIEAPHD GPYGASSSNE PAAPSEELPG 480 LQQLRNGTDP PAVGASAGAT TTQDLSTQVT IPGTGSGEHS QA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373414.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373415.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024373416.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 1e-148 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2R6XC55 | 0.0 | A0A2R6XC55_MARPO; Uncharacterized protein | ||||
STRING | XP_008218439.1 | 1e-165 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-129 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0039s0042.1.p |