PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0038s0083.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

BBR-BPC

Protein Properties

Length: 313aa MW: 33815.3 Da PI: 9.9904

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0038s0083.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	257.3	8.9e-79	9	312	19	301
GAGA_bind 19 slkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvls 103 ++ +++ lql+++iaerda++ e+n+a++ek a+aerd a+l+rd ala+r++al erd ++ +l +ve+++ + ++ + ++ Sphfalx0038s0083.1.p 9 HVSDHVVLQLITVIAERDAALLEKNTAIAEKMVACAERDAALLERDVALADRDAALRERDAAISTLAKVEKESLasrgRKRLSSAGGIN 97 5678999**********************************************************9999877566644445667777 PP GAGA_bind 104 gtksidslqqlse.............pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178 g+k ++ + ++ ++ ++++ + +++ + ++++ + + ++ + +++ a+++ + a kk++k+ +++++ Sphfalx0038s0083.1.p 98 GSKLLQRVGVAEQcslagdfsqpnsvMTFDAESAHgAGDHRAFQRTETQAELQRKQS-PGGSAGVLARNKVLRPAMKKTRKPLTPQRRL 185 888887777766656666555444222222222221222222222222222222222.2222222223333333335555566677776 PP GAGA_bind 179 kkesad.er.skaekksidl.vlngvslDest.lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263 + +++ e+ + + ++s+++ n ++ s+ +P CsCtG+ +qCY+WGnGGWqSaCCtt iS yPLP ++k+rg+R+agrKmS g Sphfalx0038s0083.1.p 186 RGPQVGeEEgKGQIRESQNVsRTNYTTVPVSApTSIPYCSCTGTNQQCYRWGNGGWQSACCTTLISLYPLPSNPKKRGSRLAGRKMSAG 274 6666653442445577788744565555555424579************************************************ PP GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 af+klLekLa+eG d+s vDLkdhWAkHGtn++vt+r Sphfalx0038s0083.1.p 275 AFEKLLEKLASEGVDISYSVDLKDHWAKHGTNRYVTLR 312 **********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.3E-62	1	312	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.7E-69	10	312	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDGAGRGDHV SDHVVLQLIT VIAERDAALL EKNTAIAEKM VACAERDAAL LERDVALADR 60 DAALRERDAA ISTLAKVEKE SLASRGRKRL SSAGGINGSK LLQRVGVAEQ CSLAGDFSQP 120 NSVMTFDAES AHGAGDHRAF QRTETQAELQ RKQSPGGSAG VLARNKVLRP AMKKTRKPLT 180 PQRRLRGPQV GEEEGKGQIR ESQNVSRTNY TTVPVSAPTS IPYCSCTGTN QQCYRWGNGG 240 WQSACCTTLI SLYPLPSNPK KRGSRLAGRK MSAGAFEKLL EKLASEGVDI SYSVDLKDHW 300 AKHGTNRYVT LR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024391178.1	2e-97	serine/threonine-protein kinase 24-like
TrEMBL	H1ZN63	1e-101	H1ZN63_PHYPA; GAGA-binding transcriptional activator
STRING	PP1S56_2V6.1	9e-97	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	9e-47	basic pentacysteine 3

Link Out ? help Back to Top
Phytozome	Sphfalx0038s0083.1.p