PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0036s0049.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 425aa    MW: 47437.2 Da    PI: 6.2724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0036s0049.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67.4e-51101481128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                           +p+GfrFhPtdeelv +yL kkv++k+++l + i+e+d+yk+ePwdL++       +  ++++++yfFs++dkky+tg+r+nrat++g+
  Sphfalx0036s0049.3.p  10 VPVGFRFHPTDEELVGYYLPKKVAAKHIDL-DLIRELDLYKLEPWDLQEqcrvdmdASGEKQTDYYFFSRKDKKYPTGNRANRATTAGF 97 
                           599***************************.99**************954767553333355588************************ PP

                   NAM  83 Wkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           Wkatg+dk+++++     +++l+g++ktLvfy+grap+g+ktdW+mhe+rl
  Sphfalx0036s0049.3.p  98 WKATGRDKPICTSkllvgQQQLIGMRKTLVFYEGRAPHGNKTDWIMHEFRL 148
                           ***********99999988889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-537170IPR003441NAC domain
PROSITE profilePS5100554.25510170IPR003441NAC domain
PfamPF023658.2E-2611148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTHSSSPTRV PVGFRFHPTD EELVGYYLPK KVAAKHIDLD LIRELDLYKL EPWDLQEQCR  60
VDMDASGEKQ TDYYFFSRKD KKYPTGNRAN RATTAGFWKA TGRDKPICTS KLLVGQQQLI  120
GMRKTLVFYE GRAPHGNKTD WIMHEFRLDD GPGMPANDDG GWVVCRVFKK TKNFKMKTSC  180
SDERAVSFEG QFGLMPENIM SSPEILSGSA SYNPGSLLDF PAAAACKQEI NLDSYNNVVV  240
PSAYHSDPFN AQLAQLAMKK LDCCNHAAMQ QPAHELSSGS FHEGQLVGRD ISCRTRDTTG  300
SFFTEQYAAT TLENDHHVDS PASSCFFPEA AHCNPEEGFL AAYDDSWATT LYESKAGYKD  360
LLRLPTSTAA VRAAAAGAAD QSLGDVHILF QLRRQQHSDL VFPSSCVEQL DTWNFNQMYN  420
QKLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-431017017165NO APICAL MERISTEM PROTEIN
1ut4_B3e-431017017165NO APICAL MERISTEM PROTEIN
1ut7_A3e-431017017165NO APICAL MERISTEM PROTEIN
1ut7_B3e-431017017165NO APICAL MERISTEM PROTEIN
3swm_A3e-431017020168NAC domain-containing protein 19
3swm_B3e-431017020168NAC domain-containing protein 19
3swm_C3e-431017020168NAC domain-containing protein 19
3swm_D3e-431017020168NAC domain-containing protein 19
3swp_A3e-431017020168NAC domain-containing protein 19
3swp_B3e-431017020168NAC domain-containing protein 19
3swp_C3e-431017020168NAC domain-containing protein 19
3swp_D3e-431017020168NAC domain-containing protein 19
4dul_A3e-431017017165NAC domain-containing protein 19
4dul_B3e-431017017165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.13e-72vascular related NAC-domain protein 1