PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0035s0103.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 250aa    MW: 28561.5 Da    PI: 8.1333
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0035s0103.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.13.7e-2680159286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W ++e++aLi+ r+em++ ++++k++k+lWe++s+km+e+g+ rsp++C++kw+nl k+ykk k ++k+      s+++ f++le
  Sphfalx0035s0103.3.p  80 WAQDEIKALIAYRKEMDSMFNTSKSNKHLWEQISQKMKEQGYDRSPTMCTDKWRNLLKEYKKAKVQDKGT-----SKVACFKDLE 159
                           ****************************************************************999973.....3456788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-570142IPR009057Homeodomain-like
PROSITE profilePS500908.4972136IPR017877Myb-like domain
SuperFamilySSF466897.42E-675138IPR009057Homeodomain-like
SMARTSM007173.8E-576138IPR001005SANT/Myb domain
CDDcd122031.92E-2978143No hitNo description
PfamPF138371.2E-1979161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSWSSGVSVI REQLFAETNS GSARNIMFEG DSRWQETPDV DQVQHQLPAS QLATAHQVLL  60
VDTSAEDQEI KAPKKRAETW AQDEIKALIA YRKEMDSMFN TSKSNKHLWE QISQKMKEQG  120
YDRSPTMCTD KWRNLLKEYK KAKVQDKGTS KVACFKDLEE LLSDRTKSVP YRSPAKLDAL  180
QHSLKGQELV QICGPIYLTV NYTTTCPSEI QVWVGPAGKN GWNCCCMQRN FFAIPESCRI  240
YSCFKFFNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A6e-3874157186DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892627.18e-56trihelix transcription factor GT-1-like isoform X4
STRINGPOPTR_0010s06510.11e-54(Populus trichocarpa)
STRINGXP_010248872.12e-53(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.36e-52Trihelix family protein