PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0031s0057.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1549aa MW: 167102 Da PI: 4.3287

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0031s0057.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.4e-07	24	54	3	34
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkg 34 W t E++llv av+++G+ +W++Ia+++ Sphfalx0031s0057.1.p 24 CWGTCEELLLVSAVRRHGTSNWNLIASELK-D 54 69999**********************997.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0047	21	81	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-6	25	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	25	78	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.446	25	79	IPR017877	Myb-like domain
CDD	cd00167	1.29E-5	29	75	No hit	No description
SuperFamily	SSF47370	7.46E-19	1145	1267	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	2.7E-18	1153	1284	IPR001487	Bromodomain
SMART	SM00297	7.2E-13	1155	1265	IPR001487	Bromodomain
CDD	cd04369	1.49E-16	1164	1260	No hit	No description
Pfam	PF00439	8.7E-12	1171	1250	IPR001487	Bromodomain
PROSITE profile	PS50014	11.491	1196	1246	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1549 aa Download sequence Send to blast
MGELALTDNV PQEQPEASGR GADCWGTCEE LLLVSAVRRH GTSNWNLIAS ELKDRAISLN 60 VCPVYFSEEA CKQKYDSLRG RYGSSTSTSR DDDTGNNMHW FEELRKLRVA HLKRELELYD 120 GSIGSLQVKI KRLKAEKAQD MLLSKQAGIT VAKAQSNDSL LVTMSHEIHV SSSPSDEGSV 180 MDDMVHSSKT PSSLPLEKPM VPENGEVDEQ GPNLLPAPSP EQVTCEDQQV QDSAEEVKGT 240 SPIVADMAVG VDDSSQQSGE IHNLEVETTE QPSVLGTSTD ESKPGAELHN VAHSVPQEGE 300 NAFVSSIAEL DSKQKDGLLE ELVEPAVGGH EAVRTEFRSA DEDTEMLQSE DVEQDLDAEV 360 LPQGSSGNDM ILAQVEGTSL PAALELDSVR DKDADDELLA ASEQTDVPDA EPVPSSPPCL 420 SVTTVKLEDV GTTQPEAVML DDSGEKLTDG RHHANLSNEQ DKMEDPPCIV LSGTESVDEF 480 PEATSSNGGL KSQENVELDL DVAQEGPEKQ SDTVVLCDGG HLEVADEHNV DVGVGSEETL 540 AEIHLIPEQC ADLTHEIVHH VEEVGTCQSK LVSTLTVEED LVDGNLAIPD VAKEVVDLDM 600 RDDEVAEKLA DVHSNDAMSP SDLKLVPSEA SMDTEVDGFK EGTVINGDKH EELGNNSFVY 660 PPHSVMLGLA ADGPDVQIII ALDEPNDVLT NIKSKTILTS GDVGGESVNQ LSTTQSKLTY 720 GVEDVAISRD GPEPVEKVAA DLGSTSIIAV SPEILPGDKS LHLKAGLTES NPTPSQPNAM 780 ELLKMVYGSV HDIPPESSIL PEEVAAEPPV ASVSPVPPPV LVPDPSNILP EVPAQENTLL 840 EVAMETCNEQ PKVSEMDGEA EKSRHSQESA SPAGEVKETQ ETLSTENRDD HSDVEKFQPE 900 AVDLSGASSD LHVLSPPVKE PSQEETVQQS ATDQSVEDVA HGQEEIGQLQ SQTLQFSAGD 960 EVGNTEQEKE IIQMTVDTKL ETSKDDLLQV PVIEPLALVK VNAESNEDVG SPDIPVNEPD 1020 WTEATTKVGI EGEHDSLRST PITVKIVDME KKPEETDSSQ ERKDSEKVYL PVKTVEHRPG 1080 SPVESIIGDL ESKGISTSHE GSDSVHEQYK HGSDEYGEEE EGRQGTHDYG ESQVDKSEAG 1140 SPGDGNDDLS SLSRRNRRDS KISRKLFPLL ECLQNICSDK KAKIFKGRPE IQDHRYDLLI 1200 RRHMDLTTVR GRLEEGVYSG SREFFRDLLL IFNNALVYYP SESSQFSAAK ALRAEATREM 1260 DRIFRMEALL NQDGPATGTR ESKKPKSGEG GAVPIVSGSP ALVGGSVTGV LATAVAPSLD 1320 KASRKRSGSR APIAVETSCS ETLVDSEAAG ARSGSANVVN APSSGRAGEA AESQEDEEVN 1380 GRFKDTKSLH KGGSGRGKVP REELLEGILS KNVSNKGLGR VKLRGMKVDD SKKSGAPYRA 1440 VGSKIKEERE DTEKKKGKER DEIGDNDLLR KGKSVTKLKD RDVMREREGE SKAVPTRKAP 1500 SAPRPPSNSH DTISQTVVRP ARGVRKPVNS TKEPARVPEQ QPKKRARK*

Sequence ? help Back to Top

Protein Sequence Length: 1549 aa Download sequence Send to blast

MGELALTDNV PQEQPEASGR GADCWGTCEE LLLVSAVRRH GTSNWNLIAS ELKDRAISLN  60
VCPVYFSEEA CKQKYDSLRG RYGSSTSTSR DDDTGNNMHW FEELRKLRVA HLKRELELYD  120
GSIGSLQVKI KRLKAEKAQD MLLSKQAGIT VAKAQSNDSL LVTMSHEIHV SSSPSDEGSV  180
MDDMVHSSKT PSSLPLEKPM VPENGEVDEQ GPNLLPAPSP EQVTCEDQQV QDSAEEVKGT  240
SPIVADMAVG VDDSSQQSGE IHNLEVETTE QPSVLGTSTD ESKPGAELHN VAHSVPQEGE  300
NAFVSSIAEL DSKQKDGLLE ELVEPAVGGH EAVRTEFRSA DEDTEMLQSE DVEQDLDAEV  360
LPQGSSGNDM ILAQVEGTSL PAALELDSVR DKDADDELLA ASEQTDVPDA EPVPSSPPCL  420
SVTTVKLEDV GTTQPEAVML DDSGEKLTDG RHHANLSNEQ DKMEDPPCIV LSGTESVDEF  480
PEATSSNGGL KSQENVELDL DVAQEGPEKQ SDTVVLCDGG HLEVADEHNV DVGVGSEETL  540
AEIHLIPEQC ADLTHEIVHH VEEVGTCQSK LVSTLTVEED LVDGNLAIPD VAKEVVDLDM  600
RDDEVAEKLA DVHSNDAMSP SDLKLVPSEA SMDTEVDGFK EGTVINGDKH EELGNNSFVY  660
PPHSVMLGLA ADGPDVQIII ALDEPNDVLT NIKSKTILTS GDVGGESVNQ LSTTQSKLTY  720
GVEDVAISRD GPEPVEKVAA DLGSTSIIAV SPEILPGDKS LHLKAGLTES NPTPSQPNAM  780
ELLKMVYGSV HDIPPESSIL PEEVAAEPPV ASVSPVPPPV LVPDPSNILP EVPAQENTLL  840
EVAMETCNEQ PKVSEMDGEA EKSRHSQESA SPAGEVKETQ ETLSTENRDD HSDVEKFQPE  900
AVDLSGASSD LHVLSPPVKE PSQEETVQQS ATDQSVEDVA HGQEEIGQLQ SQTLQFSAGD  960
EVGNTEQEKE IIQMTVDTKL ETSKDDLLQV PVIEPLALVK VNAESNEDVG SPDIPVNEPD  1020
WTEATTKVGI EGEHDSLRST PITVKIVDME KKPEETDSSQ ERKDSEKVYL PVKTVEHRPG  1080
SPVESIIGDL ESKGISTSHE GSDSVHEQYK HGSDEYGEEE EGRQGTHDYG ESQVDKSEAG  1140
SPGDGNDDLS SLSRRNRRDS KISRKLFPLL ECLQNICSDK KAKIFKGRPE IQDHRYDLLI  1200
RRHMDLTTVR GRLEEGVYSG SREFFRDLLL IFNNALVYYP SESSQFSAAK ALRAEATREM  1260
DRIFRMEALL NQDGPATGTR ESKKPKSGEG GAVPIVSGSP ALVGGSVTGV LATAVAPSLD  1320
KASRKRSGSR APIAVETSCS ETLVDSEAAG ARSGSANVVN APSSGRAGEA AESQEDEEVN  1380
GRFKDTKSLH KGGSGRGKVP REELLEGILS KNVSNKGLGR VKLRGMKVDD SKKSGAPYRA  1440
VGSKIKEERE DTEKKKGKER DEIGDNDLLR KGKSVTKLKD RDVMREREGE SKAVPTRKAP  1500
SAPRPPSNSH DTISQTVVRP ARGVRKPVNS TKEPARVPEQ QPKKRARK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	2e-20	DNA-binding bromodomain-containing protein

Link Out ? help Back to Top
Phytozome	Sphfalx0031s0057.1.p