PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0030s0180.4.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 640aa    MW: 69661.6 Da    PI: 8.3352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0030s0180.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-18417511394
                           EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           k l psdv+++gr+vlpkk ae++        +e++ l +ed  +g++W+v+++y  +++s+ ++l +++  Fv++++L+egD ++++ 
  Sphfalx0030s0180.4.p 417 KLLQPSDVTSLGRIVLPKKEAESClpylA--VKEGMSLAMEDfDTGKTWKVRYRYwpNNRSR-MYLIENTGVFVRSHQLEEGDLLILY- 501
                           8899**********************743..347899*****9999*********5444444.66666********************. PP

                           -SS.SEE..EE CS
                    B3  85 dgr.sefelvv 94 
                            ++ ++ + v+
  Sphfalx0030s0180.4.p 502 -RNvERNKIVI 511
                           .4446665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-27413518IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-21414510IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.969415517IPR003340B3 DNA binding domain
SMARTSM010193.7E-16415517IPR003340B3 DNA binding domain
PfamPF023627.7E-15417511IPR003340B3 DNA binding domain
CDDcd100171.83E-20421512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MSSMELAAVD ENLYLAEAWL SELELVNDID HAALPAILLP CSYSQESARF PNSEADTTNL  60
GLRDEQIQMV RESMISAPHD HDDVAAAATT SDLQMSVNNV NPPPHRSSYL LDCSTRAMCK  120
KVTLKEAVMY EAIEKLGGGE KGLHLLMDHV RSWIAAAARN CSTTSTTDQI ISISDSLQQL  180
CVKASDQASP PPPPPPPPST SPPLQLAGAD HLYITDLAAS HMSTSSQNAV SRYSCKAHRK  240
RKQSSIANPT ATETNDHTDS SSVYTRSSSY DHSCWNRIVT NPLQLEKRRL AGYNVYHSRS  300
SMSRTSSTAA AATRAARKHR MAYQRQQLIG RSCAAGKQPA AAAINSSSSS SDYAMQQQQP  360
TASPATGLAA PVAKKLLQQP VSSTANKQQY SRNQFFINSR QKQQGPSTGT LVLLLHKLLQ  420
PSDVTSLGRI VLPKKEAESC LPYLAVKEGM SLAMEDFDTG KTWKVRYRYW PNNRSRMYLI  480
ENTGVFVRSH QLEEGDLLIL YRNVERNKIV IQGKKKTQSD GSCIGAAVKD EKLSAAAAAA  540
DAIATQDSGG LVMPRLDAKL QRMAVKWEQE ITKDQGIFQD KKHGSSCGLA PGGQNFQQLL  600
SFPSLKDSDL LMADVSHLPS WDVNSTAATA AVISKVEPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-314135203110B3 domain-containing transcription factor FUS3
6j9b_D2e-314135203110B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-33B3 family protein