PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0027s0195.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1091aa MW: 116993 Da PI: 5.228

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0027s0195.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.8e-16	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Sphfalx0027s0195.1.p 66 RERWTDEEHQKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 110 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-16	60	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.24	61	115	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.6E-16	64	113	IPR006447	Myb domain, plants
SMART	SM00717	3.9E-13	65	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-9	66	106	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-13	66	109	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-9	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1091 aa Download sequence Send to blast
MTTTAAGYGE HQAGGGRGEE VRIQQSTTTT GGPPSIAATT AAAAKDDAAA LDSTKIRKPY 60 TITKQRERWT DEEHQKFLEA LKLYGRAWRR IEEHIGTKTA VQIRSHAQKF FSKVERDHQI 120 AAAATAGGGG IGKGGVVVVP EGLIDIPPPR PKRKPSHPYP RKAREDDTPP VVSPLSAAVV 180 TEKPKNGFWE TTTTRQEDDD DGGGDDDDDD DDATEELLEE RSSPHDALPP KDSISEEDKQ 240 LPAAVAPPPP PVQQVLSEPS WVPFPAFHAF PPQWGNSSFW NQLPNAPNHQ HPACQNFENW 300 AQFVGGSMPR EHKPPWYHPS QMAYNSAAAM ATAALWPAVV SGASSTITPN EDGASKAAVA 360 GAAASAATIA AASAWWAFTQ SLASPLSFAA MGALYNPFIA TMPSPLLFPQ GKWLEQTKLQ 420 NLEPAAGEEE EEEEEEEDTP QVQTLEEPTS KELLCSSSSG HHGLVRSSAA HRVAERAIWV 480 QEVKARRGMM TAMGSSSAGS SDICASSSQG GSCSKPESGD GGSKGSRQEL ELVKNHNHSG 540 ERKCTSPSSA GSSPPTQLHK LKSQLSGLVQ KELSSAHARR SGDEQQREDE VGFENWKQLQ 600 DETFSGFSMN CHPVTSQCLL PALQFVKSGD LSGSNSFPTK GSNENPTEKS SSEEEHHHPP 660 EVQTPSGSEE CGSDGGILTA ENNTSAEEDS GGGGGGGGGP SSNSSACGNL PEGNDHSGSS 720 DGSSDVEATP NVPSSCKEEN EAKIVETVTE EEAAQVSSRC FSDDGFTPFR KDNEKHVHEG 780 CAVRHLLPRS LSLEAEQQKE EAMGRHQTAF RVLFARETLP RTFSPPPRGD SLEALQAPAK 840 SLSPHLRSRI SSHSKASSFV SLPAADEDHH PCTTACVADQ HDNSAFNAWQ PSKASKSTTA 900 EIERCESCSI ITTSSGAPQV TTKGTETQWC PKRTRDTKRR ERYGEGGATF DWLTLRTESS 960 RIPEQVKDDF MDLHFNLHQE ESLHQQQSLT HNIDLFPRLK KEKFAVACSS KLDDTRSSLA 1020 FSEIISSEPF LSGSSSNTHS SVSFLMARPP PPSSSSSGTA AALSTVSSNL SVKYSSVGFV 1080 PYQRVPSSEP *

Sequence ? help Back to Top

Protein Sequence Length: 1091 aa Download sequence Send to blast

MTTTAAGYGE HQAGGGRGEE VRIQQSTTTT GGPPSIAATT AAAAKDDAAA LDSTKIRKPY  60
TITKQRERWT DEEHQKFLEA LKLYGRAWRR IEEHIGTKTA VQIRSHAQKF FSKVERDHQI  120
AAAATAGGGG IGKGGVVVVP EGLIDIPPPR PKRKPSHPYP RKAREDDTPP VVSPLSAAVV  180
TEKPKNGFWE TTTTRQEDDD DGGGDDDDDD DDATEELLEE RSSPHDALPP KDSISEEDKQ  240
LPAAVAPPPP PVQQVLSEPS WVPFPAFHAF PPQWGNSSFW NQLPNAPNHQ HPACQNFENW  300
AQFVGGSMPR EHKPPWYHPS QMAYNSAAAM ATAALWPAVV SGASSTITPN EDGASKAAVA  360
GAAASAATIA AASAWWAFTQ SLASPLSFAA MGALYNPFIA TMPSPLLFPQ GKWLEQTKLQ  420
NLEPAAGEEE EEEEEEEDTP QVQTLEEPTS KELLCSSSSG HHGLVRSSAA HRVAERAIWV  480
QEVKARRGMM TAMGSSSAGS SDICASSSQG GSCSKPESGD GGSKGSRQEL ELVKNHNHSG  540
ERKCTSPSSA GSSPPTQLHK LKSQLSGLVQ KELSSAHARR SGDEQQREDE VGFENWKQLQ  600
DETFSGFSMN CHPVTSQCLL PALQFVKSGD LSGSNSFPTK GSNENPTEKS SSEEEHHHPP  660
EVQTPSGSEE CGSDGGILTA ENNTSAEEDS GGGGGGGGGP SSNSSACGNL PEGNDHSGSS  720
DGSSDVEATP NVPSSCKEEN EAKIVETVTE EEAAQVSSRC FSDDGFTPFR KDNEKHVHEG  780
CAVRHLLPRS LSLEAEQQKE EAMGRHQTAF RVLFARETLP RTFSPPPRGD SLEALQAPAK  840
SLSPHLRSRI SSHSKASSFV SLPAADEDHH PCTTACVADQ HDNSAFNAWQ PSKASKSTTA  900
EIERCESCSI ITTSSGAPQV TTKGTETQWC PKRTRDTKRR ERYGEGGATF DWLTLRTESS  960
RIPEQVKDDF MDLHFNLHQE ESLHQQQSLT HNIDLFPRLK KEKFAVACSS KLDDTRSSLA  1020
FSEIISSEPF LSGSSSNTHS SVSFLMARPP PPSSSSSGTA AALSTVSSNL SVKYSSVGFV  1080
PYQRVPSSEP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-32	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0027s0195.1.p