PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0026s0180.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family BBR-BPC
Protein Properties Length: 329aa    MW: 35874.7 Da    PI: 9.7384
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0026s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind258.34.4e-793432827301
             GAGA_bind  27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgtksidslq 112
                            ++++iaerd ++ e+n+a++ek aa+aerd a+lqrd+ala+r+ al++rd ++ al +v+++++    + p++ + ++g+k ++ + 
  Sphfalx0026s0180.1.p  34 VVLQLIAERDVALLEKNTAIAEKMAACAERDAALLQRDAALADRDSALLKRDAAISALAKVQKESSsrgRKRPSSAGGINGSKLLQRVG 122
                           4788999************************************************99999888777678899****************9 PP

             GAGA_bind 113 qlse............pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad..er 186
                            +++              l+ ++++ + e++  + ++++ + + ++   ++      +++ ++++kk+++ +   +++ + ++ +  ++
  Sphfalx0026s0180.1.p 123 FTDHcslpgdfqpnsvMTLGAKSTQdAGEHRAFHGTETQAELQGKQSPGHSPGVMARNTAFRPEMKKPQNWPLPLQRRMQGPQIEgdQE 211
                           98888999666555444444444443444444444454444444555555554455555555566666666655666666666554233 PP

             GAGA_bind 187 skaekksidl...vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                             + ++s +    +  +v +  +  P+P CsCtG  +qCY+WGnGGWqSaCCtt iS yPLP+++k+rg+R+agrKmS gaf klLekL
  Sphfalx0026s0180.1.p 212 EGQIRESENAsrsSYTTVPV-SAPTPIPYCSCTGLNQQCYRWGNGGWQSACCTTLISLYPLPMNPKKRGSRLAGRKMSAGAFDKLLEKL 299
                           33333333331002223332.23468899************************************************************ PP

             GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           a eG d+s pvDLkdhWAkHGtn++vt+r
  Sphfalx0026s0180.1.p 300 ALEGVDVSYPVDLKDHWAKHGTNRYVTLR 328
                           ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.4E-661328IPR010409GAGA-binding transcriptional activator
PfamPF062177.7E-6835328IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEGVGRGNRL PHKGVLDHHH MVLQPHKGVP DHHVVLQLIA ERDVALLEKN TAIAEKMAAC  60
AERDAALLQR DAALADRDSA LLKRDAAISA LAKVQKESSS RGRKRPSSAG GINGSKLLQR  120
VGFTDHCSLP GDFQPNSVMT LGAKSTQDAG EHRAFHGTET QAELQGKQSP GHSPGVMARN  180
TAFRPEMKKP QNWPLPLQRR MQGPQIEGDQ EEGQIRESEN ASRSSYTTVP VSAPTPIPYC  240
SCTGLNQQCY RWGNGGWQSA CCTTLISLYP LPMNPKKRGS RLAGRKMSAG AFDKLLEKLA  300
LEGVDVSYPV DLKDHWAKHG TNRYVTLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391178.11e-102serine/threonine-protein kinase 24-like
TrEMBLH1ZN631e-106H1ZN63_PHYPA; GAGA-binding transcriptional activator
STRINGPP1S56_2V6.11e-101(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.11e-47basic pentacysteine 3