PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0024s0107.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ERF | ||||||||
Protein Properties | Length: 360aa MW: 38775.9 Da PI: 5.6493 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g Wv eIr p++ ++r++lg+f tae+Aa+a++aa+++l+g Sphfalx0024s0107.5.p 41 PVYRGVRRRP-WGVWVTEIRRPKK---KARIWLGSFATAEMAARAYDAAALALRG 91 68********.**********854...6*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-14 | 41 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-20 | 42 | 99 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-34 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.868 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-31 | 42 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-18 | 43 | 100 | No hit | No description |
PRINTS | PR00367 | 1.6E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MSDQGEAPEN LSSLAGALKE MESRKKVEQM DTSSEGDSRH PVYRGVRRRP WGVWVTEIRR 60 PKKKARIWLG SFATAEMAAR AYDAAALALR GPSALLNFPE YSASLPRPLD LSDKSIQAAA 120 TEAARRLARR PGKSPRRTTV ASSSPSPPSV RASSCSFEQS SFRTTTCTSI PGSSMPSPGS 180 TGCVTAMDQI TYFNASNSTS DVIVTKSTVQ RPPVGDIIST SSSTSSSNTL HDEDTSSHPE 240 FLATLATRKL EKRPMPAAFH SVEHCSGFQG TNDSRIAPPP SSSSAIQDAD QAEEAQQQQQ 300 NGYADEEMIF NMPSVLACLY DHGLCLPPEP HTLAEAADAS SSEDCDQESG NWEPHLWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 30 | 102 | 1 | 76 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25820.1 | 4e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0024s0107.5.p |