PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G25820.1 | ||||||||
Common Name | ERF042, ESE2, F17H15.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24864.8 Da PI: 4.7722 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 26 | 74 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G r ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g AT2G25820.1 26 YRGARMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALSIKG 74 88889888.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-10 | 25 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-34 | 25 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-31 | 25 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-20 | 25 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-10 | 26 | 37 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-32 | 26 | 84 | No hit | No description |
PRINTS | PR00367 | 3.4E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVDSHGSDTE CSSKKKKEKT KEKGVYRGAR MRSWGKWVSE IREPRKKSRI WLGTFPTAEM 60 AARAHDVAAL SIKGSSAILN FPELADFLPR PVSLSQQDIQ AAAAEAALMD FKTVPFHLQD 120 DSTPLQTRCD TEKIEKWSSS SSSASSSSSS SSSSSSSMLS GELGDIVELP SLENNVKYDC 180 ALYDSLEGLV SMPPWLDATE NDFRYGDDSV LLDPCLKESF LWNYE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 22 | 83 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 266661_at | 0.0 | ||||
Expression Atlas | AT2G25820 | - | ||||
AtGenExpress | AT2G25820 | - | ||||
ATTED-II | AT2G25820 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen. {ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G25820.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought. {ECO:0000269|PubMed:16307362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G25820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005395 | 0.0 | AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence. | |||
GenBank | AY974198 | 0.0 | AY974198.1 Arabidopsis thaliana clone At2g25820 AP2/EREBP transcription factor mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565609.3 | 1e-164 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q52QU1 | 1e-165 | ERF42_ARATH; Ethylene-responsive transcription factor ERF042 | ||||
TrEMBL | A0A178VTP5 | 1e-162 | A0A178VTP5_ARATH; ESE2 | ||||
STRING | AT2G25820.1 | 1e-164 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT2G25820.1 |
Entrez Gene | 817124 |
iHOP | AT2G25820 |
wikigenes | AT2G25820 |