PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0024s0044.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 830aa    MW: 89077.9 Da    PI: 7.4231
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0024s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-13497590394
                           EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           k+lt  dv+++gr++lpkk ae+   +++ +e++ l++ed  s+r W++++++  ++ks++yvl+  + eF k  +Lke+D+++++  +
  Sphfalx0024s0044.1.p 497 KELTITDVGELGRIILPKKDAESKlpQLDAKEGQFLQMEDyNSNRHWSLRFKWwpNNKSRMYVLE-STGEFIKFYELKEKDVLTLY--K 582
                           788999***************999**888888999*****8888*********99999999**99.9*******************..4 PP

                           SSEE..EE CS
                    B3  87 rsefelvv 94 
                           + e++lv+
  Sphfalx0024s0044.1.p 583 DAEEKLVI 590
                           44554555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-19490593IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-14493591No hitNo description
SuperFamilySSF1019361.06E-13494587IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-6495596IPR003340B3 DNA binding domain
PfamPF023623.3E-9497590IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MDVVDGKIVS AVENKRGSCW SSAKRSSEDG SVLVAGDLEL GLGLESRHLK TAAAACPAQL  60
GKNSSPLLVL SDDFLVDMQQ WLAAQMMNNC CSSRSSNESS STGIAHTREL DGYDDSNAPP  120
PSSPPELKRH KSCSRSSICP DGWIPPAAGA DHNQISPPPP PHKAAAAADC ETALALVRRS  180
REQQQQQQRW ENFTQQMNHG LYVVDPPFSS PLRKKIGGGC PLQSFSPYCP EQQQLLASCK  240
RSAFSYPPVS SASSLPLLVE AKTTSGGVPA AAVAASYNGT MRLQTTASAQ SILPGPHTIQ  300
SSLSSSSSSI VFDTQCSSSV IGSSQCCSSS VAGSCSSCVP DIIPRAIINY GSAAAVRRSN  360
ASCAMLSSGF GSDAVSTTMK SWMSQERNAR ETSSSVCSTR ADPMHTDEDS VRQHMHQVLS  420
RHMHSAGPPP SPLSCSSVDG EKGSLLPPTE SGPDNTPAHM SWASYSQTAN SVFSTKPSQV  480
RGKSRSWTEP LRFLLRKELT ITDVGELGRI ILPKKDAESK LPQLDAKEGQ FLQMEDYNSN  540
RHWSLRFKWW PNNKSRMYVL ESTGEFIKFY ELKEKDVLTL YKDAEEKLVI RGQKSTPSFL  600
RNDSMNDPAI MPSYSSKYTG RRSIKGVCSR AAATTSTPTI PTPSSSALIQ PPRCWGRRAS  660
NLAGPVSSLV SEVKKEVTLE VKLENKGNSS SSGEGSIIND ATGSPPQSGY GSSSGGKDKF  720
LPLPTSIKPT NPTHLDTKPL NYDLMLVPGV QVGQAAFAEV GNDLVEVVDT DNHSLGYLLQ  780
PENTGFDWGK LPDPPALELP GFKIEESWGD SMQILRCLNI SSSGAFVQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-294915889106B3 domain-containing transcription factor LEC2
6j9c_D4e-294915889106B3 domain-containing transcription factor LEC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-31B3 family protein