PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0032.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 740aa    MW: 82308.3 Da    PI: 6.1108
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.55e-30244328187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           +W+ qe+laLi++r+em+ ++r++ lk+plWee ++++re g++rs k+Ckek+en+ k+ykk+k+g+ +r  ++ +++++f+ql+a
  Sphfalx0023s0032.1.p 244 QWPTQETLALIQIRSEMDADFRDAGLKAPLWEELAQRLRELGYNRSGKKCKEKFENIYKYYKKTKDGKVGR--QDGKNYRFFSQLDA 328
                           7********************************************************************97..66678*******85 PP
2trihelix98.36.7e-31564649187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k ev +Li++r ++e++++++  k+ lWe++s+ m   g+ r++k+Ckekwen+nk+y+k ke++kkr ses++tcpyf+ql+a
  Sphfalx0023s0032.1.p 564 RWPKPEVETLIQLRGDLESKFQEAGPKGMLWEDISAGMTCLGYDRNAKRCKEKWENINKYYRKAKESNKKR-SESTKTCPYFQQLDA 649
                           8*********************************************************************8.89999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.712237301IPR017877Myb-like domain
SMARTSM007170.0073241303IPR001005SANT/Myb domain
PfamPF138371.1E-20242329No hitNo description
CDDcd122032.45E-28243308No hitNo description
SMARTSM007171.3561623IPR001005SANT/Myb domain
PfamPF138372.1E-22563650No hitNo description
CDDcd122031.44E-28563628No hitNo description
PROSITE profilePS500906.771564621IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MQSSGQYGVP DAIPQFVSGS SGVPPAIGGR SQQQQPTPHM FSSLAREMAM SPSSSSSVVH  60
GHVIPHHHHH HQQQQQHQQY QLQQHHHHQQ QQQQQQLLPT TQHHHHHHHQ THHDFQHPNT  120
SSHLQQHHLH QQQQQLQMQQ HHEQFPQQQQ KMVELLGLGE PDSSSPEQQP PPPMPLPITS  180
RPTLGTFQQL LSGDSLYNEE EEEEEDVVVV AAGGEGVGGG SGGQDEDGIE GGEEEGKSTG  240
GRNQWPTQET LALIQIRSEM DADFRDAGLK APLWEELAQR LRELGYNRSG KKCKEKFENI  300
YKYYKKTKDG KVGRQDGKNY RFFSQLDALY GGGGGRGGGG SGHNKMMAQG GDGGVNLVVT  360
GHGGSSSAVH DVSLSAAQRI AAAAAAEDSE GRGPLLNSSE DNDEDEEEEA GEDDAVDQEE  420
NEKMKHKDRK LESSSDVLFL ESVVKKLLDK QENMQRKFLE SMEQYEEDRL AREESWRKQE  480
MARLGREHEF RIHEHSVAAT RDAALVAFLQ KVTGQTLELP KIPSPPHPLI VVTTGENQQQ  540
QQQQQHPLQE DPERDGMYDP NSKRWPKPEV ETLIQLRGDL ESKFQEAGPK GMLWEDISAG  600
MTCLGYDRNA KRCKEKWENI NKYYRKAKES NKKRSESTKT CPYFQQLDAL YGKGTLGTQQ  660
SGKTDKDQLE ELHGDRYQVA SGDTQDESGP IEGIDGPFTR LAAGAASSAS NGVPAHLFSS  720
PENGISGNQG KSKKAKRIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333339GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-165trihelix transcription factor GTL1-like
TrEMBLA0A2K1J0Q11e-164A0A2K1J0Q1_PHYPA; Uncharacterized protein
STRINGPP1S19_341V6.11e-165(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.29e-60Trihelix family protein