PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0020.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 278aa    MW: 32442.2 Da    PI: 8.8826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.3e-06103126123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           ++C++C+k+F+++ +L +H  + H
  Sphfalx0023s0020.1.p 103 WQCGYCHKVFRTQTYLDSHFDNrH 126
                           58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.871103127IPR007087Zinc finger, C2H2
PROSITE patternPS000280105126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MMAWSTCLLL FVMLALCWNK FGVSADGYRA AEERQRKQEE EKGRVHCSRS RSRTVQEILS  60
KYLLPFVETQ KYNLSSNSCR LHPNNDIFHE QEEKIEQLRP MQWQCGYCHK VFRTQTYLDS  120
HFDNRHSSML GTSANRCLAD FCGALHCDYV DGFSNSKWKK TTCKPAVVDR NRHLCEVLAN  180
NCFPKEQSAA AQWLNDFFKR QFCDAHTCDK QLQPFPHGSG KHENSSLYFA ICILTPFILA  240
IIYFVVYLQY RDLSMTRISL RRLSQHTHIK MRKAKLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357038.11e-111uncharacterized protein LOC112272993
TrEMBLA9TY401e-107A9TY40_PHYPA; Predicted protein
STRINGPP1S368_21V6.11e-110(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-66C2H2-like zinc finger protein