PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0021s0179.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 508aa MW: 54982.2 Da PI: 9.8031

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0021s0179.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.6e-33	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+peLHerFv+av+qLGG+e+AtPk +l++m+v+gLt++hvkSHLQkYRl Sphfalx0021s0179.1.p 51 KQRLRWSPELHERFVDAVSQLGGPERATPKGVLRVMGVQGLTIYHVKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.229	48	108	IPR017930	Myb domain
SuperFamily	SSF46689	7.88E-17	50	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-31	50	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-25	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-9	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-21	148	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MYHQTKKFAI VTHHGTARSA STCNDNIVSP GLESPGGSSP SAAAGGGGGA KQRLRWSPEL 60 HERFVDAVSQ LGGPERATPK GVLRVMGVQG LTIYHVKSHL QKYRLAKYVP ESASDGSKLE 120 KKNIPGASDS VVPASDATSS GVQVVDSDAL HMQMEVQKRL HEQLEVQRHL QLRMEAQSKY 180 LKRIIEEQQQ RAAGTQDVAG RHPVVTAASG HEQEERRVSL VKEPSSEAES VDVNERKLTR 240 LPDLRLSIVE QEVAMPSSWA SDKQRATRSS PCNITREHQF AITASGAASS QASALLRPTQ 300 LQQAAQVQYS SASGYSHAAS AFTSSWTLSQ PSSKRTRFGS ELMSSFSQSL SPELDLRQHG 360 RGMGSSSNEF QQSIQVQRTP IIPLNPASNR YGFNLAMGFQ RSSYIHESAQ VLYAPQPLLS 420 SPGDSLHLQS HGFQRPAATQ GAAHQHVFMQ PERGMSSFQV AKGEEEGSPL LPAPKSRASD 480 ALRQMFRRWE ENSGGNAGGT SSQGNTS*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MYHQTKKFAI VTHHGTARSA STCNDNIVSP GLESPGGSSP SAAAGGGGGA KQRLRWSPEL  60
HERFVDAVSQ LGGPERATPK GVLRVMGVQG LTIYHVKSHL QKYRLAKYVP ESASDGSKLE  120
KKNIPGASDS VVPASDATSS GVQVVDSDAL HMQMEVQKRL HEQLEVQRHL QLRMEAQSKY  180
LKRIIEEQQQ RAAGTQDVAG RHPVVTAASG HEQEERRVSL VKEPSSEAES VDVNERKLTR  240
LPDLRLSIVE QEVAMPSSWA SDKQRATRSS PCNITREHQF AITASGAASS QASALLRPTQ  300
LQQAAQVQYS SASGYSHAAS AFTSSWTLSQ PSSKRTRFGS ELMSSFSQSL SPELDLRQHG  360
RGMGSSSNEF QQSIQVQRTP IIPLNPASNR YGFNLAMGFQ RSSYIHESAQ VLYAPQPLLS  420
SPGDSLHLQS HGFQRPAATQ GAAHQHVFMQ PERGMSSFQV AKGEEEGSPL LPAPKSRASD  480
ALRQMFRRWE ENSGGNAGGT SSQGNTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-25	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-25	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-25	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-25	51	108	1	58	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0021s0179.1.p