PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0020s0242.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 428aa MW: 47480.2 Da PI: 9.1983

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0020s0242.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.1e-15	31	112	2	82
trihelix 2 WtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 Wt +e +L+ea+++ +e l +k ++ +W++v++++++rg++rs +qC+ kwen ++kk+++ e +r ++++ +yf Sphfalx0020s0242.2.p 31 WTLKESIVLLEAKKREKEILTGSKrnsvSADEKWRAVAEYCWSRGVQRSKEQCRFKWENTMPDFKKVRDYEDDRGDNDK---SYF 112 **********9977666654333445999***************************************9966665...344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.503	23	91	IPR017877	Myb-like domain
Pfam	PF13837	2.8E-10	31	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MMGEGDKGER FEQVVAGATK EEDRVYRPGV WTLKESIVLL EAKKREKEIL TGSKRNSVSA 60 DEKWRAVAEY CWSRGVQRSK EQCRFKWENT MPDFKKVRDY EDDRGDNDKS YFEMESWQRK 120 QLSLPPNLNR DLYGIMDKLL LRRPSKQAGS GSTKKESRGK EVVQQDETAV LEAAVSTLPS 180 GEEFPSEIPR RDSVVPRDIT SLVGTEVSQG EIVGERSASG AQTATRQKDM PTPDVKGSAR 240 KRRKKTSETR ELESGFGAPV EHRTSVEIGS ASTPLPGFRE LDTTATDTAR ADVRSGSVLI 300 SEVPSQGPGV QLVRLEASRE LPFKQMGQQH QGRSEAGDTS SPVKGQKKVG PSSTEPAAEI 360 NTTTAEAQKS ADYLMRTEEK KDARHREKIA LEREKLAANK EAMNTIAMAL NNVANAFLKM 420 ADLLQRS*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MMGEGDKGER FEQVVAGATK EEDRVYRPGV WTLKESIVLL EAKKREKEIL TGSKRNSVSA  60
DEKWRAVAEY CWSRGVQRSK EQCRFKWENT MPDFKKVRDY EDDRGDNDKS YFEMESWQRK  120
QLSLPPNLNR DLYGIMDKLL LRRPSKQAGS GSTKKESRGK EVVQQDETAV LEAAVSTLPS  180
GEEFPSEIPR RDSVVPRDIT SLVGTEVSQG EIVGERSASG AQTATRQKDM PTPDVKGSAR  240
KRRKKTSETR ELESGFGAPV EHRTSVEIGS ASTPLPGFRE LDTTATDTAR ADVRSGSVLI  300
SEVPSQGPGV QLVRLEASRE LPFKQMGQQH QGRSEAGDTS SPVKGQKKVG PSSTEPAAEI  360
NTTTAEAQKS ADYLMRTEEK KDARHREKIA LEREKLAANK EAMNTIAMAL NNVANAFLKM  420
ADLLQRS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-21	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0020s0242.2.p