PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0019s0207.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 296aa    MW: 33274.5 Da    PI: 4.5013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0019s0207.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15139225197
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           f+  +++ dv++   l +p kf++e+  +    ++ +++l++ + ++We  +    + ++  l++GW +Fv++++L++gD +vF+l+ +
  Sphfalx0019s0207.1.p 139 FVISMLQLDVSSDF-LKFPDKFCKEYlpS----GDHKIKLMH-EEKEWETFF--VANLRG--LSEGWMGFVQDKKLEAGDACVFELMAK 217
                           56678888999887.***********553....445799998.7799**999..666666..9***********************998 PP

                           SEE..EEEEE CS
                    B3  88 sefelvvkvf 97 
                           ++f  +++++
  Sphfalx0019s0207.1.p 218 DGF--KIHIV 225
                           898..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-18134228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-18134227IPR015300DNA-binding pseudobarrel domain
CDDcd100176.35E-18137224No hitNo description
PROSITE profilePS5086311.66138228IPR003340B3 DNA binding domain
SMARTSM010196.5E-18139228IPR003340B3 DNA binding domain
PfamPF023623.3E-13139225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKPNGSSYED VRKQRMEENK RRMEELGLAD LSKSLSKPKV SRPYRKRPTL EEQGLQRRRS  60
SRVAAIQEAK EEVMNSKDES EEEASDSGDS DPESPVVRKS YSFRSNRKSL PWGDSSNRAS  120
IEATEAAEDI EKELENPGFV ISMLQLDVSS DFLKFPDKFC KEYLPSGDHK IKLMHEEKEW  180
ETFFVANLRG LSEGWMGFVQ DKKLEAGDAC VFELMAKDGF KIHIVQASEQ ASANTGKNGS  240
GDNLKKDKKG SNGEQAIDLE TSEDENVGDA TESGDEWVPR NTSDEDDDND DTWKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-23B3 family protein