PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0018s0105.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ZF-HD
Protein Properties Length: 595aa    MW: 64278.1 Da    PI: 6.9939
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0018s0105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer74.91.2e-23268318557
           ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                           +Y eC+kN+ a+ G++++DGCgEfmp+ g+e  ++al CaACgCHRnFHRr +
  Sphfalx0018s0105.1.p 268 TYGECQKNQCADRGTTSLDGCGEFMPA-GKE-GKSALACAACGCHRNFHRRIM 318
                           7*************************9.666.4789**************976 PP
2Homeobox20.21e-06527587157
                           TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRakekk 57 
                           +r+Rt+++ eq e L+++ e+   ++  +++e + + +   g++ +  k+W +N ++k+k+
  Sphfalx0018s0105.1.p 527 KRTRTCISMEQREKLNAFAERaGWTVVGQRKETIEAACqdiGIEPKTLKYWIHNSKQKWKR 587
                           79*************99888778999999999999999999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.9E-21268316IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.4E-20268316IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-11269316IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.34269317IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-18517588IPR009057Homeodomain-like
SuperFamilySSF466892.23E-12520587IPR009057Homeodomain-like
PROSITE profilePS500719.604524588IPR001356Homeobox domain
TIGRFAMsTIGR015654.9E-17527583IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGSSSYEIMG RRGDELHDDF TDKGRGAGVG EGLDHHGGDS GPQEYWTSSC STLEATKPLR  60
VKLNAREVTY GDLTAPILIP RGGRVISEGS KSWPILVDHS KENGSGFDDQ DHMSPIALQG  120
RNNDIQVPGA NGMIQDRGTA RGGGGDKIPK AAGDSEIEDM GAGGNTGDDD RWNPTAMGED  180
RGSIQQGEAG DDQVDWSIHK RQRAGRLKGP AEHWDLYTGE REPGQEDHRW EPITTATTTT  240
VGGKNGKGSL AWPVNGGGGG GGGGGHGTYG ECQKNQCADR GTTSLDGCGE FMPAGKEGKS  300
ALACAACGCH RNFHRRIMLS GEEEDEREEK REKEEGGGIN YHHSSLCSIE HVAHELMTAA  360
SRAIPSLSQD FQLGHPKGHL NCVRDLSLKE RKTMAKIFIE NLDHIAKMMF STAECLAMLQ  420
KSSNSRQTAS SRERERENKY NHAGGASPLR TTAATSYEGP LSSDVSPVST VEKRAVSLPP  480
PLSLQPWDDG AAGGPKLNGG SCGTQLHNSI AISRKVAERR LGNHKSKRTR TCISMEQREK  540
LNAFAERAGW TVVGQRKETI EAACQDIGIE PKTLKYWIHN SKQKWKRQRS DSTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1583588KWKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388356.15e-75uncharacterized protein LOC112288433
TrEMBLA0A2K1JVR21e-73A0A2K1JVR2_PHYPA; Uncharacterized protein
STRINGPP1S31_206V6.12e-74(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.16e-16mini zinc finger 1