PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0018s0009.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 631aa    MW: 66660.8 Da    PI: 7.3339
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0018s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08219239526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C++f++ G C++Gd C +aHg
  Sphfalx0018s0009.1.p 219 ACPDFRK-GSCRRGDACEYAHG 239
                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.3E-6214240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751215241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4219241IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6219239IPR000571Zinc finger, CCCH-type
SMARTSM0035611249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085249273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MRRLNTFSSV GLQEAAQSAP HAYQRSHSFG NTGSLQQAFH LMGSSNNSAA SSVTKPDLGG  60
GGLSLLDGGG GLVDDSCSFG DGSAKWVMET GLDGTTKMGR CGGSSGSSSS SDLRSSPLSF  120
GGGGSAMMMM SSGCSPLVGS PTFCDSLQSF NKFLPSNNED EEAWTVVDTY GCDQFRMFEF  180
KVRRCMRGRS HDWTECPFAH PGEKARRRDP RRFHYSGTAC PDFRKGSCRR GDACEYAHGV  240
FECWLHPARY RTQPCKDGRN CRRRVCFFAH TPEQLRLLPA AAQAATVAAR SAASGGGLVA  300
SEAAASPRGG GGGVYDGAPV YDGNAFDGSS SPAGTHAACS PLSHFNGLMT SAALSGHVCF  360
PSQISSPTST LVGHAHSPPS LSPPLSPSGS PPHSPSSTTH GWPNSMASSF SGLSAGQATM  420
SQAYTQVALA RSQSSQGMGI GAHPHSPPVP GHRRHLDRLN SMPTLSIPSG DHRSMQHQAV  480
GLPGSAPVSP AVVGQQRNSM MELIATLQQL ELRGGSVSPN GTTQWLQQQQ QHYSSEPSPL  540
RRSSLGVVGT PPNHVQWEQK EPWEVDENEE GEPTVQRVES GRGLRAKIYG RLGKELPIEA  600
GNADVPDLGW INELVKEEPE QQQTPPGEGT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378892.10.0zinc finger CCCH domain-containing protein 35-like isoform X2
TrEMBLA0A2K1KFH90.0A0A2K1KFH9_PHYPA; Uncharacterized protein
STRINGPP1S177_93V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.13e-68C3H family protein