PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0034.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 548aa    MW: 58891.1 Da    PI: 7.156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08246266526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C++f++ GtC++Gd C +aHg
  Sphfalx0017s0034.1.p 246 ACPDFRK-GTCRRGDACEYAHG 266
                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.9E-6241267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873242268IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-7246266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4246268IPR000571Zinc finger, CCCH-type
SMARTSM0035611276299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085276300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MPGVLIDENP FGLENLNSGG GGGGGSIYDF VGYSSSSPLS SHSQSSARHT MRRLSTFSAG  60
MKDSEPSSLG LSQSVPNVYQ RSHSFGNNNT GSLHAFNFFG SPPDSPAKSD LGMSFLDGVE  120
ESFGDGGSGK GLFEGGVKGG SGHGCSDLRS LSFGGSAMMS GSVVGSPTFP DSVVHSFNKF  180
LPCNNEDEEA WSAVDMYGCD QFRMFEFKVR RCMRGRSHDW TECPFAHPGE KARRRDPRRF  240
HYSGTACPDF RKGTCRRGDA CEYAHGVFEC WLHPARYRTQ PCKDGRNCRR RVCFFAHTPE  300
QLRLLPAAAQ AATVAARSGG GGGLVGSQAS ALSAASTYDG CPASLSEGVA YTQAQATLAR  360
SQNSNQGMVG VGGTRPHSPS TPAHRRHLDR LNSMPTLSIP SERSLQQLAV GLSGSAPVSP  420
AGGHHQSKSM LELVATLQQL ELGGSTSPST QWLQQHYTSG PSPLRHCSVS VPGTPTKVHW  480
EQKERWEYDE NEEDSTVQRV ESGRDLRAKI YGRLGKENPM EAGNVDAPDL GWVNELVKEE  540
PEQTPTW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378736.11e-115zinc finger CCCH domain-containing protein 35-like
RefseqXP_024378891.11e-115zinc finger CCCH domain-containing protein 35-like isoform X1
TrEMBLB8LMK41e-115B8LMK4_PICSI; Uncharacterized protein
STRINGPP1S177_93V6.11e-114(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-71C3H family protein