PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0016s0217.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 1271aa MW: 138503 Da PI: 5.8334 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00085 | 388 | 409 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rH r+H Sphfalx0016s0217.2.p 388 KCDKCSREFCSPFNYRRHTRMH 409 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.305 | 387 | 414 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 389 | 409 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1271 aa Download sequence Send to blast |
MVTDYKKIKE QDISVAAAFM DLEAGLLAGR SCLLVGVEES KHVPKACKGS SEDNHHPNAL 60 ASGDSLFLDI NGGSKDYACV DTEQGKPMPA YSVDPKFVKS TSKNEISFLE REEGKPSTDI 120 KEGTEVVAEL PGLRRRRGSK LDIQKAQHSP DGGGGEVANG DRKSGSWSVH SKVVPLPTGL 180 ETRQQKSVEK PSSKGVKGKG THSDEDLSVQ QSAAKAAGKK GTEPSSVLDT FFQTIVQEPC 240 MSFTSRPGDK PTAHYTTWPD VFDHHAAVVN KIPKSLKIEE MGTKMMRDGS WDEGSGAAAD 300 SHSMELERDP MISKMKAAGS LGRVGSLQGA AARDGNLQGL KTVPQAMAVF AQAAAAAKAT 360 GKQIPFLDDL TDLPGWPLLS PSKVQLQKCD KCSREFCSPF NYRRHTRMHR RISPLDKEDL 420 NMKRKHITEF WDKLLPEEAQ HIISSKNCEV YEDLSATATG KSAVTTTLSS FLNQASVKSL 480 PHAYLKAGQE LLEIVDNRGG VFPLPSEHLL NILDEASEKT FLCGEPPLAT QNYGYQADAG 540 KNQYEEKNLI ASLSFIVEQT LVKAWMTNKE AEALRNQQEL VKEEEAALMK KRERHFQQKK 600 KKKKSRQKGV KERKGNASQL APHEMENESM EDEEGPSPEI IEEDDSPTAS SISLASSGHE 660 PNLPEPLELE NYEQAGQVVV RDVALEGEVC TREPLVPMQK ELINTQTSHE AVGQGNQQEC 720 SQDVRDLAAG SLHNCCADGL FCSKVTMEES RMQQLACVQV PLDENALGAS EGSQAPVQAK 780 SGQNSLECLK VEQEEQWSVQ YRGQELEQKV ERVIKDPRMQ AAENLPSSIF RRTGQNLCGM 840 ESRYLEGSQH QNFSFKPSAR KPSTTVSAYA TKAGSGVSSS LGFGLPTSQQ QQYRSKPVTN 900 RSPHVVWTRK TPPQPAAVDS ATESLEDESE KCDATASNLH EMVESFPESH ALNVDSVVIT 960 SKAPKEERLI SENREAEADA AVSSSTSGGV FGGVSKMSSM SLGMFNLDTN SEDWPCLPHR 1020 SSAQSTYGPK PTSISVLSMS SIQPEAGAVA MVINKGSVSC PKEYPEQEGF HKSLPSTVHV 1080 PKEAQAEGCL DDSRQVLVGS LTVPLEAFDG QSKDFSAGVS HYTYSMPRHL PFMSLNPKNL 1140 KSHAGSAATG EQRERGTVLK PGSLLSGTSR FLAAKVWRPV RSSGEHDEDA DVNSSHVGLT 1200 HIASECEDGV MDMGASHSAW IAEALECHYS RWITAMQDPE AVHHTEPVQS CMEVQSASWN 1260 EFFERARARC * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 589 | 603 | KKRERHFQQKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25610.1 | 3e-53 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0016s0217.2.p |