PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0174.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 614aa    MW: 66107.4 Da    PI: 6.2684
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0174.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.7e-18399487286
                           EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           +k l psdv+++gr++lpkk  e+h     +k  e++ +++ed  +g +W+++++y  +++s++y+l+ ++ eFvka+gL+egD ++++
  Sphfalx0016s0174.1.p 399 QKDLRPSDVGNLGRIILPKKESEAHlpclTLK--EGVLVSMEDfDTGMTWTFRYRYwpNNRSRMYLLE-NTGEFVKAHGLEEGDLLIIY 484
                           68899**********************87666..789******9999*********665666666666.******************99 PP

                           E-S CS
                    B3  84 ldg 86 
                           ++ 
  Sphfalx0016s0174.1.p 485 RHL 487
                           432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-25396501IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-21397486IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.095398497IPR003340B3 DNA binding domain
SMARTSM010191.2E-15398499IPR003340B3 DNA binding domain
PfamPF023622.5E-14399486IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MAGGRGKEES QVCFQGIIPS SSSSPLQMCH QPGLIDLGSG DLSLQLGSSA SYSATSSSSN  60
SRGSADQYDV DPVTDLSPDD LSFLQDGEVR AMFKKTTVNE ALLNQAVDRL GGGRKGMKGL  120
IAYIKLWIRE KSNSELSMCQ CIASLGELQT PALLQASSSS AVPDYNVSPH GHNTTPPVSL  180
EPQVTNGLEA NNSSGLNGLE ANNSSGLKRP LAPFEPPLQH PPQAVHFHRD SKVCRTFGGT  240
LFAEAAIDSG FSLRETVSCA AGGMTTYSPT ICNSVMNLIN PPNDRLMIHD MNVHQPVASL  300
QTAGSGFERH ADDSFNLSPA ASKRAARKNR IAQQRQSLAV SRSVSQGSMS SLGCGSWTGL  360
PGAGGISDRH QANSPIQPRA PVRNKGQVWK TDSLLLLLQK DLRPSDVGNL GRIILPKKES  420
EAHLPCLTLK EGVLVSMEDF DTGMTWTFRY RYWPNNRSRM YLLENTGEFV KAHGLEEGDL  480
LIIYRHLQQK FVIRGKKNGC SEAPFVPTGV CLPNDTHSLA RVPSEGGTMK VEEIHDERLH  540
LNVPVDDSSK MEPLDTFLQD VMQGLHNEQC GEGLQQLERF PSLDPDVSVD DILGLAFAGG  600
GPSTIVPKIE PAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-363964973105B3 domain-containing transcription factor FUS3
6j9b_D2e-363964973105B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-35B3 family protein